Gene Nmar_0437 details

Gene Information

• Locus tag: Nmar_0437
• ID: 5774700
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: +
• Start bp: 387372
• End bp: 388058
• Gene Length: 687 bp
• Protein Length: 228 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 641316067
• Product: ERCC4 domain-containing protein
• Protein accession: YP_001581771
• Protein GI: 161527945
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1948] ERCC4-type nuclease

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 0.000467796
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

GTGAATTTAG AAAACCTCCG AATTATTGTA GATGAAAGGG AACGCAAAAG TGGAATTCCC 
GAATTACTAA AATCAGTTGG CCTTAATCTT GAGATGAAGA CTCTTCCAAT CGGTGATTAC 
ATTGTTGCAC CTGAAACTGT TGTGGAGAGA AAAAGCATTC GTGATTTGAT GGCATCCGTA 
TTTGATGGAA GACTCTTTGA TCAATGTACT AGACTAAAGG AGCATTTTGA GAATCCTGTT 
GTACTAATGG AAGGAAATGT AGATGAGATT GAAGAGATTA CAGAAAACCC TTTGATATTT 
TATGGTGCAA TCTCTACCGT GGTTCTTGAT TTTAAAATTC CAGTAATTCC TACTCCTAGT 
GCAACACATA CTGCTAAGTT GTTAGTATCG ATGTGTTCCA GAAAGGATGC TCCAAAAGGG 
CCTTATCTTA AGAAAATAAA AAAATCATCT GATTTAGAGA GACAACAATT ATCCTCTCTT 
TGCAGTTTAC CTGGAATTGG AGAAAAGTTT GCAATAAGGA TGCTTGAAAA GTTTGGTACT 
CCTCTCAAAG TATTTACCGC AACTACTGCA GAGCTATCTA AAGTTGAAGG TTTAGGAGAT 
GCAAGAGCCA AAAAAATCAA AAAAGTTCTT GACACAAAAA GTAAACATCT CAAAAAATCA 
AATCAAAAAA CTTTGCATGA TGACTGA 

 

Protein sequence

MNLENLRIIV DERERKSGIP ELLKSVGLNL EMKTLPIGDY IVAPETVVER KSIRDLMASV 
FDGRLFDQCT RLKEHFENPV VLMEGNVDEI EEITENPLIF YGAISTVVLD FKIPVIPTPS 
ATHTAKLLVS MCSRKDAPKG PYLKKIKKSS DLERQQLSSL CSLPGIGEKF AIRMLEKFGT 
PLKVFTATTA ELSKVEGLGD ARAKKIKKVL DTKSKHLKKS NQKTLHDD