| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0430 |
|---|
| Symbol | |
|---|
| ID | 5773233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 383542 |
|---|
| End bp | 384228 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641316060 |
|---|
| Product | putative RNA-associated protein |
|---|
| Protein accession | YP_001581764 |
|---|
| Protein GI | 161527938 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1500] Predicted exosome subunit |
|---|
| TIGRFAM ID | [TIGR00291] rRNA metabolism protein, SBDS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0113628 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGATG TAACAGTTGC AAGATTCTCT TTTGAAGGAG AGAAATTTGA GATATTGGTA
AAACCTGATC CAGCACTAGA GTACAAGCTT GGAAAGAAAA AAGATATTTC TGCAATTTTG
GTTTCTGAAG ACATCTACAC TGATTCAGGA AAGGGAACAA AACCTTCTAC TGAAAAACTA
CTCAAAGCTT TCAAAACTGA AGATCAAACT GAAATTGCTC AAATAATTAT GCAAAAAGGT
GATCTTAATC TTACAACTGA TCAAAGACGA AAGATGATTG AAGACAAGAA AAAACAGATT
GTAGCATACA TTGCAAAGAC CTATGTCGAT CCTAAAACTC ACTTACCTCA CCCACCTTTG
AGAGTTGAGC AAGCAATGAA AGATGGAAGA GTTTCAGTTG ATCCTCAGAA AAGTGTTGAT
GAACAAGTAA AAGATATTGT AGACAAACTT CGTTCAATAA TTGCTCTAAA ATCTGAGAAT
TTGCAATTAG AGATTATCAT ACCTGCACAA TATGCTTCAC AATCATATGC TGTTCTAAAG
TCAGTAGGTT CTCTGAAAAA AGAAGAATGG CAAAATAATG GTTCTCTAAA AGCAATACTT
GAAATACCCG CTGCAGCAAG GCCAAACGTG ATAGACAGAT TAGGTTCTAT AACCAAAGGT
TCTGCTTCAG TTGAGGTAAT GCAATAA
|
|---|
| Protein sequence | MADVTVARFS FEGEKFEILV KPDPALEYKL GKKKDISAIL VSEDIYTDSG KGTKPSTEKL
LKAFKTEDQT EIAQIIMQKG DLNLTTDQRR KMIEDKKKQI VAYIAKTYVD PKTHLPHPPL
RVEQAMKDGR VSVDPQKSVD EQVKDIVDKL RSIIALKSEN LQLEIIIPAQ YASQSYAVLK
SVGSLKKEEW QNNGSLKAIL EIPAAARPNV IDRLGSITKG SASVEVMQ
|
|---|
| |