Gene Nmar_0428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_0428 
Symbol 
ID5773699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand
Start bp382339 
End bp383004 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content36% 
IMG OID641316058 
ProductRNA polymerase insert 
Protein accessionYP_001581762 
Protein GI161527936 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0123472 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGACTTTG AAGATTTTCA TCAAGATTTG TCATCCTTAG AAGTAATTAG CAAAGATAAT 
CAAAAAATAG CTTTAAAGCT CAAAGGCGTA CCATTACAAT ATGCAAATGC CCTAAGACGT
GTTTGTCTCA ATGGTGTTCC AGTCTTTGCA GTTGACACAG TTGATATTAT TGAAAATTCA
TCAGTTTTAC CAGATGAAGG TTTAGCACAT AGGTTAGGTC TCATACCACT CAAAACGGAT
TTGAGCAGAT TTAACGAGCC ATCAAAGTGT GAGTGTCAAA GTGAAACAGG ATGTTCAAAT
TGTAAGGTAA TGTTAGTTTT AGATTCTGGA GATTCAGATG TTACAAGAAC AGTTCTATCA
AACGAACTAT CATCTGAAGA CGACTCTATT ACTCCAATAT CAGACAAAAT TCCAATTGTA
GAACTTGCAC CAGGTCAAAG AATCAAAGTT GAATGTTATG CAAGACTTGG ACGGGGTACA
GAGCATGCAA AATGGAATTC TGCAAATGTT TCAATGTTAA CTGAAACAGA CAAGGATGAT
GAGAGAATTC TTACTGTTGA ATCAACTGGA GCACTTAATC CTGAGCAAAT TATCTTGTCA
GGAGTAGAAG AAGTAGGTCA TAGATTGGCC GAATTCAAAG ATACAATCGA CCAAATCAGC
GAATAG
 
Protein sequence
MDFEDFHQDL SSLEVISKDN QKIALKLKGV PLQYANALRR VCLNGVPVFA VDTVDIIENS 
SVLPDEGLAH RLGLIPLKTD LSRFNEPSKC ECQSETGCSN CKVMLVLDSG DSDVTRTVLS
NELSSEDDSI TPISDKIPIV ELAPGQRIKV ECYARLGRGT EHAKWNSANV SMLTETDKDD
ERILTVESTG ALNPEQIILS GVEEVGHRLA EFKDTIDQIS E