| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0406 |
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| Symbol | |
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| ID | 5773471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosopumilus maritimus SCM1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_010085 |
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| Strand | + |
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| Start bp | 364893 |
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| End bp | 365891 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 641316035 |
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| Product | pseudouridylate synthase subunit TruB |
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| Protein accession | YP_001581740 |
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| Protein GI | 161527914 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00431] tRNA pseudouridine 55 synthase
[TIGR00451] uncharacterized domain 2 |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.189117 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTCTAA AACAATTAGA GAATCTAATT GAAGTTGATC AAGATATTAC TGATGATGCA
TATGGCACAT ACTATGATAA AAGAACAATA GAACAATTAC TAAACTATGG AATTATTTTA
CTAGACAAAC CTCCTGGACC TACAAGTCAT GAGACAGTAG CATGGACCAA AAGAATTTTG
AAATTACCAA AGATTGGACA TAGTGGAACG CTAGACCCAC AAGTTTCAGG AGTACTTCCT
TTAGGGTTGG GTGAGGCAAC AAAAGCTCTA GGTGTATTGC TGTTTGGACC TAAAGAATAC
CATGCACTAG GACGTGTCCA CTCGCTTCCA TCAAAAGAAA AACTACATGA GGTAATCGAA
TCATTAACTG GAGAAATTTA CCAAAAACCT CCACAACGTT CCGCAGTAGT TAGACAAACA
AGAACTAGAA CAATTTACGA ATTTGAAGTA TTAGAACAAA AAGAAAGACT GTTACTAACT
AGAGTCCTAT GTGAGGCTGG AACATACATT AGAAAATTAT ACTATGATCT AGGTGAAATT
CTAGGACCTG GTGCAACCAT GATTGAGCTT AGAAGAACTA GAGTTGATCA ATTCAGAGAA
ACTGATGGAT TGGTGACCCT CCATGAACTT GCAAACGCAT TTGCTTTATG GGAAGAAAAG
AAAGATGATT CTAAACTAAA GAGTATGATA CAGCCTGTAG AACATGCACT AAGTGAGTTA
AAATCAGTAG TAATTCGTGA TTCTGCAATT GATGCAATGT GCCATGGTGC ACAACTAGCA
ATTCCTGGAA TTTTACAAAT ATCTCCTAGT TTGAACAAAG GTGACATTGT TGGAATTTAC
ACACAAAAAG GAGAAGCAGT TGCATTAGCC GAAGCAACAA TGTCTGGTCA GGAAATTCAA
GATGCAGTAA AAGGATATGC ATTTGAAACA AAGAGAATTA TCATGGCTCC AAACACTTAT
CCTAAAAAAT GGAGAACAAA ACCATCTTCT AAAGAATAA
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| Protein sequence | MTLKQLENLI EVDQDITDDA YGTYYDKRTI EQLLNYGIIL LDKPPGPTSH ETVAWTKRIL
KLPKIGHSGT LDPQVSGVLP LGLGEATKAL GVLLFGPKEY HALGRVHSLP SKEKLHEVIE
SLTGEIYQKP PQRSAVVRQT RTRTIYEFEV LEQKERLLLT RVLCEAGTYI RKLYYDLGEI
LGPGATMIEL RRTRVDQFRE TDGLVTLHEL ANAFALWEEK KDDSKLKSMI QPVEHALSEL
KSVVIRDSAI DAMCHGAQLA IPGILQISPS LNKGDIVGIY TQKGEAVALA EATMSGQEIQ
DAVKGYAFET KRIIMAPNTY PKKWRTKPSS KE
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