Gene Nmar_0400 details

Gene Information

• Locus tag: Nmar_0400
• Symbol: rpl30p
• ID: 5773082
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: +
• Start bp: 360791
• End bp: 361258
• Gene Length: 468 bp
• Protein Length: 155 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 641316029
• Product: 50S ribosomal protein L30P
• Protein accession: YP_001581734
• Protein GI: 161527908
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1841] Ribosomal protein L30/L7E
• TIGRFAM ID: [TIGR01309] 50S ribosomal protein L30P, archaeal

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 25
• Fosmid unclonability p-value: 0.0676264
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCAAATG CAGTACTAGT TGTTAGAATC AAAGGTCAAG CAGACTGTCC TTATTGGGCA 
TCAACTACAA TGGATTTGCT AAAACTTGAA AGAAAATATC GTGCAGTAAT TCTTCCTGCA 
AAAGACAACT TACTTGGTAT GCTAAAAAAA GTACAACACT ATGTTGCTTG GGTTGATCTT 
GACACAGAGT TGGCACAAGA ACTCATTGAC AAAAAAGCAA GAAAGTCTGG ATACAAGAAA 
GTAACGCCAG AAGATCTTAA AGAATTAGGT TATGCAAGTT CTGCAGAACT AGCTGCAGCA 
CTAACTGAAG GAAAAACAAT GTTATCAAAA TTAAAACCAC TAAAACCTTG GTTTGCATTA 
GCACCACCAA GACACGGATT CAAAAGAAGT ACAAAGAGAT TGTATGGACA AAAAGGAATT 
CTTGGAAGAA ACAAAGAACT CGCAACAATT GTTAGGAATA TGATTTAA 

 

Protein sequence

MANAVLVVRI KGQADCPYWA STTMDLLKLE RKYRAVILPA KDNLLGMLKK VQHYVAWVDL 
DTELAQELID KKARKSGYKK VTPEDLKELG YASSAELAAA LTEGKTMLSK LKPLKPWFAL 
APPRHGFKRS TKRLYGQKGI LGRNKELATI VRNMI