Gene Nmar_0398 details

Gene Information

• Locus tag: Nmar_0398
• Symbol: rpl18p
• ID: 5773191
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: +
• Start bp: 359584
• End bp: 360066
• Gene Length: 483 bp
• Protein Length: 160 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 641316027
• Product: 50S ribosomal protein L18P
• Protein accession: YP_001581732
• Protein GI: 161527906
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0256] Ribosomal protein L18

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.0260664
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCTATT CAAAAATATT AAGGAGACTG CGCGAGGAGA AGACCAATTA TCGTAAACGT 
AGTACAATGT TGATGGGTAA GCGTGACTTT ATCACTGTAA ATATTACTAA TGAAAATACT 
CAAGTCCAAA TTCTAAAACC TGGTATGACT GGCGACAAGG TTGTTGCATC TGCACATTCT 
AGATATCTTC TTGAAAAAGG TTGGAAGGGC TCTAGAAAGA GTGTCCCAGC GGCATATCTT 
ACTGGATACT TGGCAGGAAA GAAAGCACTT GGACAAGGTG CAAAGGATGC AATCTTGTAT 
ACTGGAACTA AAAGATACAC CCAAAGAATG GCAGCAGCTC TCAAAGGAGT TATCGATGCA 
GGTCTAGAGG TTCCAGCAAA CGAAGAAACA TTTCCATCTG AAGAAAGAAT TAACGGAGAA 
CATCTTACTG TTAAAAACGA AGTCTCTAAA ATGAAATCTA CAATTGATAC TGAGGTAAAA 
TGA 

 

Protein sequence

MAYSKILRRL REEKTNYRKR STMLMGKRDF ITVNITNENT QVQILKPGMT GDKVVASAHS 
RYLLEKGWKG SRKSVPAAYL TGYLAGKKAL GQGAKDAILY TGTKRYTQRM AAALKGVIDA 
GLEVPANEET FPSEERINGE HLTVKNEVSK MKSTIDTEVK