Gene Nmar_0394 details

Gene Information

• Locus tag: Nmar_0394
• ID: 5773878
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: +
• Start bp: 355951
• End bp: 356571
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 641316023
• Product: superoxide dismutase
• Protein accession: YP_001581728
• Protein GI: 161527902
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG0605] Superoxide dismutase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 28
• Fosmid unclonability p-value: 0.177491
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGGAAAAT ACACACTTCC TGAAATGCCA TATGCTTATG ATGCATTAGA ACCTCACATT 
GACGCAAGAA CCATGGAGAT TCACCACACA AAGCATCATC AAACATACAC TGACAAACTA 
AATGCAGCTC TTGAAACATG TCCAGCTGAA ATTCAAGACA AAGATATTCT TGACATCTTG 
TCTGATATCA ATTCAGTTCC AGAAGACAAA AGAGGTGCAA TTAATTTCAA CGGTGGTGGT 
TATGATAACC ATAGGCTATT TTGGAATAAC ATGAAACCAA ATGGAGGCGG AGAACCTGGG 
GGATCAATTG CTGATGCAAT TAACGATTCT TTTGGAAGCT TTTCTGACTT CAAAGAGAAG 
TTTTCATCCA CTACAGCAGT AATTCAAGGC AGTGGTTGGG GATGGTTAGT ATACAACCCT 
TCTTCTGGAA AGGTTGAGTA CAAATCAATG CCAAACCAAA CAAGTCCTAG AACTGAAGGA 
CTAGTTCCAT TGTTAGGCTG TGATGTTTGG GAACATGCAT ACTATCTCAA CTACCAAAAC 
AAGAGACCTG CTTACATTGA AGCATGGTGG AACGTAGTTA ACTGGGATGA GGTAGAGAAC 
AGATTCTCTA AAGCAAAATA A 

 

Protein sequence

MGKYTLPEMP YAYDALEPHI DARTMEIHHT KHHQTYTDKL NAALETCPAE IQDKDILDIL 
SDINSVPEDK RGAINFNGGG YDNHRLFWNN MKPNGGGEPG GSIADAINDS FGSFSDFKEK 
FSSTTAVIQG SGWGWLVYNP SSGKVEYKSM PNQTSPRTEG LVPLLGCDVW EHAYYLNYQN 
KRPAYIEAWW NVVNWDEVEN RFSKAK