| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0348 |
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| Symbol | |
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| ID | 5773178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosopumilus maritimus SCM1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_010085 |
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| Strand | + |
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| Start bp | 312851 |
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| End bp | 316642 |
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| Gene Length | 3792 bp |
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| Protein Length | 1263 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 641315976 |
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| Product | DNA-directed RNA polymerase subunit A' |
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| Protein accession | YP_001581682 |
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| Protein GI | 161527856 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02389] DNA-directed RNA polymerase, subunit A''
[TIGR02390] DNA-directed RNA polymerase subunit A' |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATTC AAGCAGTAAA AGCAATTGAT GGAATCAGAT TCTCTGTTTG GTCTCCAACT
GAAATCAGAA AATACTCTGT TGCAGAAATC ACTGCTCCAG AAACTTATGA TGAAGATGGA
ATGCCTGTTC AAGGAGGTTT GATGGATGGC AGACTTGGAA CACTTGAACC TGGACAAAAA
TGTCTCACTT GTGGAAACAC TGCAGCAAGA TGTCCTGGAC ACTTTGGACA TTTGGAATTA
GCAGAACCAG TATTACATAT TGCATTTATT GATAACATCT ACAAATTACT ACAATCAACT
TGCCGTTCTT GTGCAAGATT AAAAGTTCCA CAAGAAGATC TTAATGTTTT CAAAACTATT
AAAGAGAAAC ACGCAGCTTA TACTGTAATT TCTCAAAAAC GTATTCCAGA ACAAATTATT
GAAAAAGCAA AGAAAGCAAA AGAATGTCCT CACTGTGGTA AAACACAATA CGAACTAATC
TTTACAAAAC CAACTATCTT TGTAGAAAAA ACAGAAATTG GAGAGCACAG ATTACTCCCA
ATAACAATCA GAGAAAGATT CTCACAAATC ATTGATGAAG ATTTAGAATT ATTATCATAT
GATCCAGTAA CTGCAAGACC TGAATGGTTT GTCTTACAAG CATTCCCTGT TCCCCCAGTA
ACTGTTAGAC CCTCAATCAT TCTAGAAACT GGAATTAGAT CTGAAGATGA TTTGACTCAC
AAGATGGTAG ATATCATCAG AGTTAATCAG AGATTAAAAG AAAGTAAAGA TGCTGGTACC
CCTCCACTAA TCGTTCAAGA CTTGGTCGAC CTATTACAAT ATCACACTAC AACATACTTT
GATAACGAAG TATCTGGAAT TCCACAAGCT CATCATCGTT CTGGACGTCC TCTCAAAACC
TTAACTCAAA GACTCAAAGG AAAAGAAGGA AGATTCAGAG GTTCACTATC TGGAAAGAGA
GTTGACTTTT CTAGTAGAAC TGTAATCTCT CCTGATCCTA ACTTGGACTT GAGTGAGGTT
GGTGTCCCAG AAGCAGTAGC CATGAAACTA ACCATTCCTG AAATCGTTAC AGAATGGAAT
ATTGAAAGAA TGAGAAAACT TGTAATTAAT GGACCTGAGA AATTCCCAGG CGTAAACTAT
ATCGTCAGAC CCGATGGTGT AAAGATTAGA CTTGATTTCG TAGAGGATCG CTCTACAATT
GCTGAAACAC TTGAGATTGG TTACTTGGTA GAAAGACATC TTGCAGATGG TGACATTGTC
ATGTTCAACA GACAACCATC ACTTCACCAA ATGTCTATCA TGGCGCACTA TGTCCGTGTA
CTCCCAGGAA AAACATTCAG ATTACATCCA TCCGTTTGTC CTCCTTACAA CGCAGACTTT
GATGGTGATG AAATGAACCT CCACGTTCCT CAAAGTGAGG AAGCAAGAGC AGAAGCAATT
CTCTTAATGA GAGTTCAAGA CCAATTAATC TCACCAAGAT ATGGTGGTCC AATTATTGGT
GCACTAAGAG ACTTTGTAAC TGGTGCATAT CTTCTAACTA AAGACGATAC AGTATTGACT
GTTCAAGAAT TCTCAAACCT TGCAATGCTT GGTGGTTATA CAGATCCTTT ACCAAAACCC
GGAACCAAAA CCAAAGACGG TCCGGCATAC ACTGGTAAAC AACTTTTCTC GTTGTTCTTA
CCAAAAGACT TCAACTATGT AATTACATCA AAATGGTCAA AGGGAACAAA AGGACAAGCA
AAAGATGTTG TAATTAAAAA TGGTGAACTA ATCAGCGGTG TCATTGACAA ATCTTCAATT
GGTGCAGAAG AACCAGAAAG TGTTCTTCAC AGAATTGCAA AAGATTACGG TAATGCAGTT
GGAAAAAGTT TCCTCAACTC TATTCTCATT ATGGTAAAAC AATTCATCAC CCACTATGGC
TTCAGTTATG GTTATGGTGA CCTTATTGTT CCTGACAAAG ACAAACAACA GATTCTTGAT
GATATTCAAG GAACTTATGA TATTGTAAGT GATTTGACTG ATCAATACAA GAAAGGAACA
CTCAAGCTTA CTAGAGGTAT GAAACCTGAA GAAGCCTTAG AGGCATACAT TGTAAATGAA
TTAGGTAAAG CAAGAGACAA GGCAGGCTCT TCTGCAAATG ACTGTCTTCC AGCAGACAAT
GCAGGAAAAA TCATGGCTAC AACAGGTGCA AGAGGTTCAT CACTTAACGT AGGTCAGATG
GCCGGGGCTC TTGGACAACA ATCAAGAAGA GGAAACAGAC TCCATGAGGG TTACAACAAC
AGAGCATTAA CTCACTATCA AGAACATGAT GATAATCCTG ATGCACATGG ATTTGTAAAA
TCCAATTACA GAGAGGGTCT ATCTGCACTT GAATTCTTCT TCCACGCAAT GGGAGGTCGT
GAAGGACTTG TAGACACTGC AGTTAGAACA CAACAAAGTG GTTACATGCA GCGTAGATTA
ATCAACGCAT TAGAGCACAT TAGATTAGAA TATGATGGAA CAGTAAGAGA TCCACACGGC
CACATTGTAC AATTCCTTTA TGGTGAAGAT GGAATTGATG TGCAAAAGAG TGATCACGGT
GAAGCATTTA ACCCAAGCAG ATTAATTGAA TCTCAAAAAA TTATTGATTC TGGCAAAAAG
GCAACAAAAG AAGAGATTGA AACACTAGCT AAGAAATACA CAAAGACATT CAATCCAAGA
TTAACTAAAC TTGTAACTGA TGCATTACAA AATTCTGAAT TAAGCAAAGA TGGTGTTGAA
GCAGTATGTA AGAAAGGACT GTTACTTTAC AACAAAGCAA AAGTAGAACC AGGACAAGCA
GTTGGAATTA TCACTGCACA GTCAATCGGT GAACCTGGTA CTCAGATGAC ATTAAGAACA
TTCCACTTTG CAGGAATTAA AGAAAGAAAC GTAACATTAG GTCTTCCAAG ATTAATTGAA
CTCGTTGATG CAAGAAAGAA ACCAGTAACA CCAACTATGG ATATTTATCT TGATGATGAA
TCAAAGAAAT CAAGAGAAAA AGCAATTGAG GTTGCAAGAA ATGTTTTGCA AACCAAAGTT
AGCGCCTTGA TTGCAGATAG TGAGACTGAT TATGCTACTG AAATCAAACT AATTTTGAGT
GAAAATAGGC TCAGAGAAAG AGGATGCTCT ATTGCAGAAG TTGAAGCTGC CTTGTCCTCT
AACAAGAAAT TCAAGATGGA AACAACTGGC GAACTAATCA CCCTAAAACT AGTTGAGGAA
TCTGATACTG CTACAGTAAT TGCAATCAGA AACAAGGTTC TCAACACCAC TGTCAAAGGT
GTACCTGACA TTGAACGTGT AACCCTTGTC CAAAAAGATG ATGAGTGGGT TATTCAAACA
ACTGGTTCTA ATGTTGCCAA AGTCTTAGAG GTCAAAGGAA TTGATAAGAG AAACGTTAGA
ACAAACAACG TCTTTGAGAT TGCCGGAACT CTTGGAATTG AAGCTGCAAG AAATGCATTA
ATCAATGAAC TTAACAGTAC TCTGGAAGAC CAAGGACTTG AAGTTGATAA TAGATACATC
ATGTTAGTAG CTGACTTGAT GTGTTCACGC GGTTACATGC AACAAATTGG AAGACATGGA
ATTGCTGGAA CCAAAGATAG TGTCTTAGCA AGAGCTGCAT TTGAGATTAC TGTTCCAACA
ATTGCACATG CTGCACTTGG TGGAGAAATT GAACAACTCA AAGGTATTAC TGAAAACGTA
ATTGTTGGTA GTAACATTCC AATTGGAAGT GGTACAGTTG ATTTGTACAT GCAAGTAAGC
AAGAAGAAAT AG
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| Protein sequence | MSIQAVKAID GIRFSVWSPT EIRKYSVAEI TAPETYDEDG MPVQGGLMDG RLGTLEPGQK
CLTCGNTAAR CPGHFGHLEL AEPVLHIAFI DNIYKLLQST CRSCARLKVP QEDLNVFKTI
KEKHAAYTVI SQKRIPEQII EKAKKAKECP HCGKTQYELI FTKPTIFVEK TEIGEHRLLP
ITIRERFSQI IDEDLELLSY DPVTARPEWF VLQAFPVPPV TVRPSIILET GIRSEDDLTH
KMVDIIRVNQ RLKESKDAGT PPLIVQDLVD LLQYHTTTYF DNEVSGIPQA HHRSGRPLKT
LTQRLKGKEG RFRGSLSGKR VDFSSRTVIS PDPNLDLSEV GVPEAVAMKL TIPEIVTEWN
IERMRKLVIN GPEKFPGVNY IVRPDGVKIR LDFVEDRSTI AETLEIGYLV ERHLADGDIV
MFNRQPSLHQ MSIMAHYVRV LPGKTFRLHP SVCPPYNADF DGDEMNLHVP QSEEARAEAI
LLMRVQDQLI SPRYGGPIIG ALRDFVTGAY LLTKDDTVLT VQEFSNLAML GGYTDPLPKP
GTKTKDGPAY TGKQLFSLFL PKDFNYVITS KWSKGTKGQA KDVVIKNGEL ISGVIDKSSI
GAEEPESVLH RIAKDYGNAV GKSFLNSILI MVKQFITHYG FSYGYGDLIV PDKDKQQILD
DIQGTYDIVS DLTDQYKKGT LKLTRGMKPE EALEAYIVNE LGKARDKAGS SANDCLPADN
AGKIMATTGA RGSSLNVGQM AGALGQQSRR GNRLHEGYNN RALTHYQEHD DNPDAHGFVK
SNYREGLSAL EFFFHAMGGR EGLVDTAVRT QQSGYMQRRL INALEHIRLE YDGTVRDPHG
HIVQFLYGED GIDVQKSDHG EAFNPSRLIE SQKIIDSGKK ATKEEIETLA KKYTKTFNPR
LTKLVTDALQ NSELSKDGVE AVCKKGLLLY NKAKVEPGQA VGIITAQSIG EPGTQMTLRT
FHFAGIKERN VTLGLPRLIE LVDARKKPVT PTMDIYLDDE SKKSREKAIE VARNVLQTKV
SALIADSETD YATEIKLILS ENRLRERGCS IAEVEAALSS NKKFKMETTG ELITLKLVEE
SDTATVIAIR NKVLNTTVKG VPDIERVTLV QKDDEWVIQT TGSNVAKVLE VKGIDKRNVR
TNNVFEIAGT LGIEAARNAL INELNSTLED QGLEVDNRYI MLVADLMCSR GYMQQIGRHG
IAGTKDSVLA RAAFEITVPT IAHAALGGEI EQLKGITENV IVGSNIPIGS GTVDLYMQVS
KKK
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