| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0347 |
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| Symbol | |
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| ID | 5773966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosopumilus maritimus SCM1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_010085 |
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| Strand | + |
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| Start bp | 309504 |
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| End bp | 312851 |
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| Gene Length | 3348 bp |
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| Protein Length | 1115 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641315975 |
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| Product | DNA-directed RNA polymerase subunit B |
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| Protein accession | YP_001581681 |
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| Protein GI | 161527855 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR03670] DNA-directed RNA polymerase subunit B |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGATT CATCCACAAA ACGTTGGCCA GTAATTCAAG ATATTTTGAA AAGAGAGGGT
ATTGCACGTC AGCACCTAAA CTCATTTGAT GAATTTTTAG AAAGAGGATT ACAAAGTATT
ATCAACGAGG TTGGTCAGAT CGATATTGAA AATGCTGAGT ACCCTTACAA AATTCAACTA
GGTAAAGTCA AATTACAACA ACCAAGAATG ATGGAACTTG ATGGTTCTAT TACTCATATC
ACTCCTGCAG AAGCTAGATT GAGAAACGTA TCTTATTCTG CACCTGTAAT GATGGAAGCA
AGTGTTGTTG AAGATGGAAA AATCCTTGAA TCAAGATTTG TCCACATTGG TGATGTTCCC
GTTATGGCAA AATCAAACGC TTGTATCTTA CACAATTTTT CTACTCAAAA ACTAGTTGAA
CATGGTGAGG ATCCAAACGA TCCTGGTGGT TACTTTATCA TTAATGGTTC TGAGAGAGTA
ATTGTTGGAT TAGAAGATCT TTCTTACAAC AAAATCATTG TTGATAGAGA AACAGTAGGT
GGAAACATTG TACACAAAGC CAAAGTTTAT TCTTCAATTG TTGGCTATCG TGCAAAATTA
GAACTTGTCA TGAAAAATGA TGGACTAATT GTTGCCAGAA TTCCTGGTTC TCCAGTTGAT
ATTCCAGTAG TTACTTTGAT GAGAGCTCTA GGTTTAGAAT CTGATAGAGA GATTGCAGCA
GCAGTTTCAT TGGTAGATGA ACTCCAAGAT GAACTAGAAG CATCTTTTGA AAAAGCAGGA
GATGTTCCAA CTGCAAAAGA TGCCATTGTT TACATCAGTA AGAGAATTGC CCCTGGAATG
CTTGAAGAAT TTCAGATTAA ACGTGCTGAG ACTTTACTTG ATTGGGGTTT GTTGCCTCAC
TTGGGCAAAC ACCCTGAAAA TAGAAAAGAA AAAGCGCAAT TCTTGGGAGA AGCAGCTTGT
AAATTATTAG AACTAAAACT TGACTGGATT AGACCTGATG ACAAAGACCA CTATGGAAAC
AAAGTCATTA AATTTGCAGG ACAGATGCTT GCAGACTTGT TTAGAACTGC ATTTAGAAAT
CTTGTCCGTG ATATGAAATA TCAATTAGAA CGTTCTGGAC AAAAACGTGG AATTAATGCA
GTAGCTGCTG CAATTCGTCC AGGAATTATT ACTGATAAAC TAAACAACGC AATTGCCACT
GGAAACTGGG GTCGAGGCAG AGTAGGTGTT ACTCAATTAC TTGATAGAAC AAACTATCTT
TCTACAATTA GTCACCTTAG AAGAATTCAG TCTCCACTAA GTAGAACTCA GCCAAACTTT
GAAGCAAGAG ACCTGCATGC AACACACTTT GGAAGAATTT GTCCAAGTGA AACTCCTGAA
GGCTCTAACT GTGGTCTTGT AAAGAATCTT GCATTATCTG GAATAATTTC TGTAAACGTA
CCATCTGAAG AAATTGTAGA GAAACTCTAT GATCTTGGAA CTGTCCACTT CTTTGATGCA
AAAGAAGATT TGAAGAAAGA CGGAACTAGA ATCTTTGTTG ATGGTAGACT AATTGGATAT
TACAAAGATG GTGAACAACT AGCAGAATCT CTTAGAGACT TAAGAAGAAA CTCAAAGATT
CATCCACATG TTGGTGTATC CTTCCACAAA TCTGAAATTG AAGGTTCAAC CCGAAGACTT
TACGTAAACT GTAATGCAGG ACGTGTTTTA AGACCACTAA TCATCATTAA AGATAACAAA
CCATTACTTA CTGCTGATTT ACTAGACAAA ATTTCAAAGA AACTCATCTC GTGGACTGAT
CTCTTGAGAA TGGGTGTTTT GGAAATGATT GATGCAAATG AAGAAGAGAA CTGTTATGTC
ACACTAGATG AAAAGGATAC AAAGAAACAC ACTCACCTTG AAGTCTTCCC ACCAGCAATC
CTTGGTGCAG GTGCTTCAAT CATTCCATAT CCTGAACACA ACCAATCTCC AAGAAACACA
TACGAGTCTG CAATGGCAAA ACAGAGTTTA GGATTCTCAA CCCCTATGAT GAATACAAGT
ACATATGTTA GACAACACTT TATGCTATAT CCTCAGGTTC CAATAGTTAA CACAAAAGCA
ATGAAACTTT TGGGATTAGA AGATAGACCT GCAGGTCAGA ACTGTGTGGT AGCAGTGTTA
CCATTTGATG GTTACAACAT TGAGGATGCC ATCGTTCTTA GTAAAGCATC AGTTGATAGA
GGATTAGGAA GAACATTCTT CTTTAGAATC TATGATGCTG AAGCAAAACA ATATCCTGGT
GGAATGCGTG ACGCATTTGA AATTCCAAAT GCTGAAGATA ACATCAGAGG TTACAAGGGA
GAACGTGCAT ACAGACTCTT AGAAGAAGAT GGTGTTGTTG CAACAGAAGC TCCAGTAAAA
GGTGGAGATA TTTTAATTGG AAAAACTAGT CCTCCAAGAT TTATGGAAGA ATACCGAGAG
TTTGAATCAT CTGGTCCTTA CAGAAGAGAT ACATCAATTG GTGTTAGACC TTCAGAAACT
GGTGTTGTTG ATACTGTAGT TATGACCCAA TCAAATGAAG GTGGAAAGAT GTACAAGATT
AGAGCAAGAG ATATGAGAAT TCCCGAAATT GGTGACAAGT TTGCATCAAG ACATGGACAA
AAAGGTGTCT TAGGAATTTT AGCTAAAGCA GAAGATTTGC CATATACTGC AAGTGGAATG
TCTCCTGATG TTTTGATTAA TCCTCATGCA TTCCCATCTA GAATGACTGT TGGTATGATG
ATGGAATCCA TATGTGGAAA ATCTGCCGCA TTACGTGGAA AGAGATTTGA TGGTTCTGCA
TTTGTTGGAG AAAAAATGGA TGAAGTAAGA GAAGTAATGG ATGCACATGG CTTTGAATAT
TCTGGTAAAG AAATAATGTA TGATGGAAGA ACTGGAAAAT CATTCCCAGT CGAAGTTTTC
ATCGGAGTTG TATATTATCA AAAATTACAC CACATGGTTG CAGACAAGAT TCATGCAAGA
GCACGTGGAC AAGTTCAAAT GTTAACAAAA CAACCAACAG AAGGAAGAGC AAGAGGTGGT
GGCCTTAGAT TCGGTGAAAT GGAGAGAGAT TGTCTTATTG CTTATGGCGC TTCTATGATT
CTTAAAGACA GATTACTTGA CGAGTCTGAT AAATCTGATA TTTTTGTATG TGAGAGGTGT
GGTCTTGTTG CTTATCATGA TGTTAAACAA AGAAAATATG TTTGCAGAGT TTGTGGTGAT
AAAGCCAAAG TCTCATCAGT TTCAGTTGCT TATGCATTCA AACTACTCTT ACAAGAGATG
CAGAGCCTCA ACGTCGCACC AAGATTGTTA ATCAAGGAGA AACTATAA
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| Protein sequence | MADSSTKRWP VIQDILKREG IARQHLNSFD EFLERGLQSI INEVGQIDIE NAEYPYKIQL
GKVKLQQPRM MELDGSITHI TPAEARLRNV SYSAPVMMEA SVVEDGKILE SRFVHIGDVP
VMAKSNACIL HNFSTQKLVE HGEDPNDPGG YFIINGSERV IVGLEDLSYN KIIVDRETVG
GNIVHKAKVY SSIVGYRAKL ELVMKNDGLI VARIPGSPVD IPVVTLMRAL GLESDREIAA
AVSLVDELQD ELEASFEKAG DVPTAKDAIV YISKRIAPGM LEEFQIKRAE TLLDWGLLPH
LGKHPENRKE KAQFLGEAAC KLLELKLDWI RPDDKDHYGN KVIKFAGQML ADLFRTAFRN
LVRDMKYQLE RSGQKRGINA VAAAIRPGII TDKLNNAIAT GNWGRGRVGV TQLLDRTNYL
STISHLRRIQ SPLSRTQPNF EARDLHATHF GRICPSETPE GSNCGLVKNL ALSGIISVNV
PSEEIVEKLY DLGTVHFFDA KEDLKKDGTR IFVDGRLIGY YKDGEQLAES LRDLRRNSKI
HPHVGVSFHK SEIEGSTRRL YVNCNAGRVL RPLIIIKDNK PLLTADLLDK ISKKLISWTD
LLRMGVLEMI DANEEENCYV TLDEKDTKKH THLEVFPPAI LGAGASIIPY PEHNQSPRNT
YESAMAKQSL GFSTPMMNTS TYVRQHFMLY PQVPIVNTKA MKLLGLEDRP AGQNCVVAVL
PFDGYNIEDA IVLSKASVDR GLGRTFFFRI YDAEAKQYPG GMRDAFEIPN AEDNIRGYKG
ERAYRLLEED GVVATEAPVK GGDILIGKTS PPRFMEEYRE FESSGPYRRD TSIGVRPSET
GVVDTVVMTQ SNEGGKMYKI RARDMRIPEI GDKFASRHGQ KGVLGILAKA EDLPYTASGM
SPDVLINPHA FPSRMTVGMM MESICGKSAA LRGKRFDGSA FVGEKMDEVR EVMDAHGFEY
SGKEIMYDGR TGKSFPVEVF IGVVYYQKLH HMVADKIHAR ARGQVQMLTK QPTEGRARGG
GLRFGEMERD CLIAYGASMI LKDRLLDESD KSDIFVCERC GLVAYHDVKQ RKYVCRVCGD
KAKVSSVSVA YAFKLLLQEM QSLNVAPRLL IKEKL
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