Gene Nmar_0310 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_0310 
Symbol 
ID5773547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand
Start bp273380 
End bp274249 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content33% 
IMG OID641315937 
Product5-carboxymethyl-2-hydroxymuconate Delta-isomerase 
Protein accessionYP_001581644 
Protein GI161527818 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.324175 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATAG CACGATTAGT ACATGAGAAT AACGAAACGT ATGGATTTGT TAAAGAAGAT 
AAAGTTGCAA CAAAAGACGA GATAACATAC CTGACAGGTG TTCCAATTCC ACACAATGTC
AAAGATTTTC TTTTTGATGG ATGGTTTGAT GAAATTAAAA ATAAAATACA AGATTTGCCT
TATGAAGAAA ATCTCTCTAA ATTCAAATTA TTAGCACCGA TTCCAAATCC CAATAAGATA
ATTTGTTTAG CATTCAACTA TGTAGATCAT GCAAAAGAAC AGGGATTAAC AGCACCAGAG
GATCCTGCCA TTGTCATAAA ACCAAGAACT GCCCTTAATG GAAATAATGC CAATATTGAA
TGCCCAGATT TTGTTACACA GTTAGATTAT GAGGTTGAAT TAGCCTTGAT AATTGGGAAA
AATTGTAAAA ATATCAGTGT CGAAGAAGCA CAAAATGTAG TTTTTGGATA CATGGTATTC
AATGATGTGT CAGCCAGAGA CATTCAGTTT AAAGACAAAC AATTCACTAG AGGGAAAAGC
TTTGATTCAT TTGCACCATG CGGACCATGG ATCACAACTG CAGATGAAAT TCAAGAACCG
CAAAATTTGA AATTAACAAC CAAAATCAAT GGAGAACTAA GACAGAATTC TTCTACAAGC
AACATGTTTA TCAAAATACC TGAAATAATT TCAAAAATCT CAAAAGTAAT GACATTAGAG
AAGGGAGACA TTATTTCTAC AGGAACACCT GCAGGAGTTA TGTTAAACAA ACCAAATGCA
ATCTTCTTAA AAGATGGGGA CAAGGTGGAG ATGGAGATTG AAGGTTTGGG AGTTTTAAAC
AATACAATTA AAGTTATAAA ATCAATCTAG
 
Protein sequence
MKIARLVHEN NETYGFVKED KVATKDEITY LTGVPIPHNV KDFLFDGWFD EIKNKIQDLP 
YEENLSKFKL LAPIPNPNKI ICLAFNYVDH AKEQGLTAPE DPAIVIKPRT ALNGNNANIE
CPDFVTQLDY EVELALIIGK NCKNISVEEA QNVVFGYMVF NDVSARDIQF KDKQFTRGKS
FDSFAPCGPW ITTADEIQEP QNLKLTTKIN GELRQNSSTS NMFIKIPEII SKISKVMTLE
KGDIISTGTP AGVMLNKPNA IFLKDGDKVE MEIEGLGVLN NTIKVIKSI