Gene Nmar_0301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_0301 
Symbol 
ID5773837 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand+ 
Start bp267870 
End bp268538 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content34% 
IMG OID641315927 
Productputative transaldolase 
Protein accessionYP_001581635 
Protein GI161527809 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00875] fructose-6-phosphate aldolase, TalC/MipB family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.103898 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATAT TTCTTGATAC TGCCAATTTA GAATCAATAA AAAAATTCAA TGACATGGGA 
TTACTTGATG GAATCACTAC AAACCCATCT CTTATGTCTA AAGAAAAAGG TAATCCTAAA 
GATGCAATGG AAGAGATTAC AAAAATCATC AAAGGTGATG TGAGTCTAGA AGTTGTCAGC 
ACTGATTTTT CTGGAATGGT TGATGAAGGA AAACGACTAC GTCAATATGG TGACAATGTT 
GTTGTTAAAG TTCCTATGAC TCCTGATGGC TTGAAAGCTT GTAAATCACT TTCATCTGAA 
GGTATTCCTG TAAATGTGAC ATTAGTTTTT TCACCAAACC AAGCTCTACT TGCTGCAAAA 
TCTGGCGCAA AATATGTTAG CCCATTTATT GGAAGATTAG ATGATATTGG TCAAGATGGT 
ATGAATCTGA TTCAAGATAT TAAAGATATT TTCAAAAACT ACCCTCATCT AAAAACCGAA 
ATTCTGGTTG CAAGTGTACG TCACCCAATG CATGTAGTTG AAGCTGCAAA AATTGGAGCT 
GATGTGGTGA CTTTACCTCC TGGAGTTTTA GATAAAATGC TTCAACATCC ATTGACAAAA 
ATTGGTTTAG AAAATTTCCT CAAAGATTGG GAAAAAGTCA AAGCTGAAAA TCCTGATATC 
AAAATCTAA
 
Protein sequence
MKIFLDTANL ESIKKFNDMG LLDGITTNPS LMSKEKGNPK DAMEEITKII KGDVSLEVVS 
TDFSGMVDEG KRLRQYGDNV VVKVPMTPDG LKACKSLSSE GIPVNVTLVF SPNQALLAAK 
SGAKYVSPFI GRLDDIGQDG MNLIQDIKDI FKNYPHLKTE ILVASVRHPM HVVEAAKIGA 
DVVTLPPGVL DKMLQHPLTK IGLENFLKDW EKVKAENPDI KI