Gene Nmar_0106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_0106 
Symbol 
ID5774309 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand
Start bp96623 
End bp97543 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content25% 
IMG OID641315726 
Productmethyltransferase type 12 
Protein accessionYP_001581444 
Protein GI161527618 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.000284903 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATGAAA GTAAAAAATA TGATTTTATT GATAATGCTT TTTGCCCTTG TTGCTCATCT 
AACAATCTTT ACATCGCATT TGAAAAGAGT TTCTTTAATC TACCTGTTTT GAAATGTAAT
GAATGTGGAT TACATTTTAT TTGGGACAAA AACCTAACAT TGAATCTGGA AAAATATTAT
GATGAAACTT ATTGGGATGT ATTTAGAAAT ATCAAAAATA AACAAATTAA AAATCAACAA
ACTGATAATG CTTATTTAAT AAAAAAATTT CCAAAATTCA TTCAAAAGTT TTTTGATTGG
ACAGGTGTAC GAAAATCTCT TTCACGCTCA CAATCATGGT ATCTATTACC CTTGTTGAAA
AAAAAACATT CATTGTTTGA ATTAGGTTCT GGTGAAGGAT TTATTCTTGA ATTTTTTGAG
AAAAATGGTT TTGACGTATT TGGTATGGAG CCATCGAAAA TAAATTTTTC ATTAATTAAT
AGAAAATTAA CTTATGGGAA ATGTGTAACT GGTTCTGCAG ATGATATAAA ATCAATAAAA
AAAAAATTTG ATGTAATAAT ATTATCACAT GTTTTTGAAC ATTTAAAAGA TTGTAAACAA
GTATTGTTAG ATCTAAAAAA AATACTTAAC CCTAACGGAA TTATTTTCAT AGATGTTCCA
AATTGCTCAA ATCTTAAAAC ATTACATGAG TCAATTTTTA CTCAACCTCA TATTTTCCAT
TTTACAAAAA AAAGTATTGA ATCCCTATCT TCATCAACAG GATTTTCTAT AATTAAAGCA
GACTTTTTTT ATGGGAAAGT TTCAACATTT TTAGATCATA TAAAATATTT CTTGTTTTGG
ATTTTTAAAA AAGATTTTTT TATTGTTTCG GATCAAAAAA ATGGAAATTA TTTACGAATT
ATTCTTACAA ATTCTGACTA G
 
Protein sequence
MNESKKYDFI DNAFCPCCSS NNLYIAFEKS FFNLPVLKCN ECGLHFIWDK NLTLNLEKYY 
DETYWDVFRN IKNKQIKNQQ TDNAYLIKKF PKFIQKFFDW TGVRKSLSRS QSWYLLPLLK
KKHSLFELGS GEGFILEFFE KNGFDVFGME PSKINFSLIN RKLTYGKCVT GSADDIKSIK
KKFDVIILSH VFEHLKDCKQ VLLDLKKILN PNGIIFIDVP NCSNLKTLHE SIFTQPHIFH
FTKKSIESLS SSTGFSIIKA DFFYGKVSTF LDHIKYFLFW IFKKDFFIVS DQKNGNYLRI
ILTNSD