Gene Nmar_0090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_0090 
Symbol 
ID5772957 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand
Start bp78944 
End bp79882 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content32% 
IMG OID641315708 
ProductABC transporter-like protein 
Protein accessionYP_001581428 
Protein GI161527602 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.101268 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATGTA TTGATGTTAA TCATCTATCA AAATCATATG GCTCCCTAAA AGCAGTAGAT 
GATATTGTTT TATCAGTAAA ACCTGGCCAA GTATTTGGAT TTTTAGGCCC AAATGGTGCT
GGAAAATCAA CTACTATCAA ATTACTCACA ACTCTGATTC CTCCCTCAAA CGGCTCCCTT
GAGATATTGG GAATCGATGC AATCAAAAAT CCATTAGAAA TACGCCACAA AATTGGAGTA
GTCTTACAAC AACCTAGCTA TGAGCCCACC TTGTCTGTTG AAAAATCCCT TGACAAGTAT
GGAATGATGT GGGATGTTCC CAAAATTCAA CGTAAGGAAA GAATGGAACA ACTCATGAAA
GATTTTGACC TAGTTGAGAT CAGAAAAAAA AGAAATGAAG ATTTGTCTAT TGGTCAGCGA
AGGCGAGTGC AAGTCGCACG TGAATTCATG CATGATATGG ATTTGTTATT TTTAGATGAA
CCTACAGTTG GATTAGATCC TAGTGCAAGA CGAAAATTGT TGGATTATTT AAAAAATAAA
GTTAAAACTG GATTGACAAT TTTCTATACC ACTCACATTC TAACAGAGGC AGAATATCTC
TGTGATGAAA TTGCAATTAT TGATAAAGGT AAAATTGTAA CTGTTGATTC TCCTGAAGCA
TTAAAAAGTA AATTTGGAAA AGAAAAAACT ATTAAAATTC ATTTATTGGA AAAAAACTCT
AAAATTCTTG ATTTACTAGA AGGAATTTCT GATTGTAAAA TAAATTTTGA ATCTGGAACA
AATATTGTAA TCCATTCTGA ACAATCTGAA TTAGTTTTGT TAAAAGTTTT GAAAATACTG
AATGATAATG ACATTGAGAT AGAAGATCTT TCTGCAATTC CAACAAATCT TGAAGAAATA
TTCCTAAAAA TGGTGAGAGA AAATGAATCC AATAATTAG
 
Protein sequence
MSCIDVNHLS KSYGSLKAVD DIVLSVKPGQ VFGFLGPNGA GKSTTIKLLT TLIPPSNGSL 
EILGIDAIKN PLEIRHKIGV VLQQPSYEPT LSVEKSLDKY GMMWDVPKIQ RKERMEQLMK
DFDLVEIRKK RNEDLSIGQR RRVQVAREFM HDMDLLFLDE PTVGLDPSAR RKLLDYLKNK
VKTGLTIFYT THILTEAEYL CDEIAIIDKG KIVTVDSPEA LKSKFGKEKT IKIHLLEKNS
KILDLLEGIS DCKINFESGT NIVIHSEQSE LVLLKVLKIL NDNDIEIEDL SAIPTNLEEI
FLKMVRENES NN