| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0084 |
|---|
| Symbol | |
|---|
| ID | 5774052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 71458 |
|---|
| End bp | 72327 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 641315702 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001581422 |
|---|
| Protein GI | 161527596 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.257288 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAC CTCTTCAAAT AGTAATTACT GGAGCCAGTG GATTTGTGGC AAAAAATCTT
AGAAAATATT TGTCTGAGAA AAATATTCAT CTGATTTCAA TATCTAGAAA AAACTTCAAA
CCATTCAAAA ATGAAACTAA AATTATTTCC AAAACCTATG AGGAACAATT ACTTTTGCCA
AAAATAAAAA ATTCATATGC ATTAATTCAT CTTGTGGGAA TTGGAAAACA GTCCACAAAA
ACTGATTATG AATCAATCAA TGTTCAATTA ACACAAAAAA TTGTCAATTT ATCAAAAAAG
GCAAAAATCA AAAAACTCGT TTATACAAGT GGATTGGGAG TATTTGCTGA TACTACTATG
GGGTATTTTA TCTCAAAATT CAAGGCTGAA ACATCTATTA TTGATTCAAA AATTGATTAC
ACAATTTTTC GACCTTCCTA TATTGTAGGT AAAGATGATC TTTTCACAAA ATATCTAAAA
AAATCTATTA AAAAAAATCA AATCATTATT CCCGGGTCTG GAAAATATTT GATACAGCCA
ATTTCTATAG GAGATGTTAC AAAATTGATT TTCCAATCAA TTATTGATAA GAGATTTAAA
AATAAAACAT TAGATCTTGT GGGTCCTGAA ATAATCTCAT TTAAGAAATA CATTCAACTG
TACTTACAAA AGAAAAAAAC TAAACTATAT CACATTGATA TTGAAGATGC TTATCGTCTT
GCCTTAACTA ACTCAGAATT TGATTATGGT GTAGATGATC TAAATATTCT AGTTGGAAAT
TTTGTTGGAG ATCACAAAAA ACTTAGAAAT CTCTCAAAAA TGAATTTTCA GTCAGTAAAA
GAATTGTTAA AGACCGGCGC CTTGCTTTAG
|
|---|
| Protein sequence | MEKPLQIVIT GASGFVAKNL RKYLSEKNIH LISISRKNFK PFKNETKIIS KTYEEQLLLP
KIKNSYALIH LVGIGKQSTK TDYESINVQL TQKIVNLSKK AKIKKLVYTS GLGVFADTTM
GYFISKFKAE TSIIDSKIDY TIFRPSYIVG KDDLFTKYLK KSIKKNQIII PGSGKYLIQP
ISIGDVTKLI FQSIIDKRFK NKTLDLVGPE IISFKKYIQL YLQKKKTKLY HIDIEDAYRL
ALTNSEFDYG VDDLNILVGN FVGDHKKLRN LSKMNFQSVK ELLKTGALL
|
|---|
| |