| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0069 |
|---|
| Symbol | |
|---|
| ID | 5772992 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 58640 |
|---|
| End bp | 59602 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 641315686 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001581407 |
|---|
| Protein GI | 161527581 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAAG AAGACCATGA ATTACTTTTA CCTCTAGTTG AAGAAGAAAA CATCTGCCTT
CCATTGCCTG TTAATGTGGT CTCAAAATAT TGGAATATTG ATTTGCCCAT GGCTGAAGCT
ACAGAGACTG CAAAAAAATA TGCAGGATTT AACGGAAGTA TACTAATTGA AGGAATTGAA
TCTGCAGAAA GACATGGATT GATATGTAAA ATTGTGCATT CTTCTCTAAA TGAACTAAAA
AAAATTATTG ATTCTGGAAT CCCTCCAATA GTAATTCTTC CAGGAATACC TGAAGTTACT
CAACATGCTT CAATTATTAC TGGTTACAAT AATGATGAAA AAACTATTTT GCATTATATC
CAAACAGGAA ATCAAGAAGG TGAAATGCAG GAAGGTGCAA TTCCTGAAGA TGTTTTTGAA
AAAGAATGGT GTGAAGAAGG AAAGTTATTG ATTGTACTTG CACCTGAAGA TATTATATCT
TCTATCAAAC TTGAAAATGA TTCTTTTGAT AAATCAAATC GATTATGTTT TGAATCAGAA
CGACAAAATA TTCTAAAAAA TTACTCAGAA GCAATCAACT CTTTAAACCA AGCAATAGAA
TTGAATCCAG AAAATTCAAC AGCACTCCAT CTTTTAGGTA CTATGATGAA TGAACAAAAA
TCTTCTGAAT GTATAAAACT TTATGAAAAA TGCTTAGAGC TCAATAATAG ATCATATTTG
ACGTATAATG GACTTGGAAA TTTTTATCTA AAAACAAATG ATTTTGAAAA AGCAGAAGAT
TGTTACACAA AAGCAATTGA AATTAATCCC AAACGTTCTG CTAAAATTTA CAAAAATCGT
GCTTATCTTA GAGAACAACA AAACAAGAAT AACGATGCAA AAGACGATCT TAAAAATTAT
CTAAAATATT TTCCAAAAGC TCCTGATAGA GGAATTATAG AACAAGCAAT TCGTGAATTA
TAA
|
|---|
| Protein sequence | MEQEDHELLL PLVEEENICL PLPVNVVSKY WNIDLPMAEA TETAKKYAGF NGSILIEGIE
SAERHGLICK IVHSSLNELK KIIDSGIPPI VILPGIPEVT QHASIITGYN NDEKTILHYI
QTGNQEGEMQ EGAIPEDVFE KEWCEEGKLL IVLAPEDIIS SIKLENDSFD KSNRLCFESE
RQNILKNYSE AINSLNQAIE LNPENSTALH LLGTMMNEQK SSECIKLYEK CLELNNRSYL
TYNGLGNFYL KTNDFEKAED CYTKAIEINP KRSAKIYKNR AYLREQQNKN NDAKDDLKNY
LKYFPKAPDR GIIEQAIREL
|
|---|
| |