Gene Nmar_0052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNmar_0052 
Symbol 
ID5774036 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosopumilus maritimus SCM1 
KingdomArchaea 
Replicon accessionNC_010085 
Strand- 
Start bp40855 
End bp41511 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content33% 
IMG OID641315669 
ProductDNA-(apurinic or apyrimidinic site) lyase 
Protein accessionYP_001581390 
Protein GI161527564 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATGG AAAAAATTCT AAGTAAAATG ATGGATACAA TGAACTCGGT AAAGACACCA 
CGAATAACTG CATTACGAGA TCTTCACGAC GCTGAGACTG GTCCATTTAG TATTTTGATT 
GGAACCATAC TTTCTGCCAG AACAAAAGAT GAGAGTACAA CAAAAGTAGT CAAGGTCCTA 
TTCTCAAAAT ACAAAAATCC AAAACAACTT GCAAATGCCA AACTAAAAGA TGTTGAAAAA 
ATTATCAAAT CAATTGGATT CTATCATGTC AAATCCAAAC GAATTATTGA AGTTGCAAAG 
ATTATTGATT CAAAATACAA GGGTAAAGTG CCTGAAGATT TGGATACTTT AGTACAATTG 
CCAGGAGTAG GACGAAAGAC TGCAAACTGT GTGCTAGTTT ATGCATTTGA GAAACCTGCA 
ATTCCAGTTG ACATTCATGT TCATAGAATT TCAAACAGAT TAGGTTTGGT TGAAACGAAA 
AACCCTGAAG AAACAGAACA AGAATTAATG AAAAAAGTTG ACAAGAAATT TTGGATTGAC 
ATTAATGACA CATTTGTTAT GTATGGTCAG AACATTTGCA AACCAATATC ACCAATGTGT 
GATGTATGTA AAATAAAGCG AAGTTGCAAA TTTTACAAAT CTAAGAACGC TTCTTAG
 
Protein sequence
MKMEKILSKM MDTMNSVKTP RITALRDLHD AETGPFSILI GTILSARTKD ESTTKVVKVL 
FSKYKNPKQL ANAKLKDVEK IIKSIGFYHV KSKRIIEVAK IIDSKYKGKV PEDLDTLVQL 
PGVGRKTANC VLVYAFEKPA IPVDIHVHRI SNRLGLVETK NPEETEQELM KKVDKKFWID 
INDTFVMYGQ NICKPISPMC DVCKIKRSCK FYKSKNAS