Gene Pmob_1952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmob_1952 
Symbol 
ID5757198 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePetrotoga mobilis SJ95 
KingdomBacteria 
Replicon accessionNC_010003 
Strand
Start bp2161798 
End bp2163435 
Gene Length1638 bp 
Protein Length545 aa 
Translation table11 
GC content35% 
IMG OID641303148 
ProductPAS modulated sigma54 specific transcriptional regulator 
Protein accessionYP_001568962 
Protein GI160903381 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGAAA TAGAACTAAT GAGGTACGTT CTTGATCAGT TACAAGATGG AGTAATGGCA 
ATAGATGAAA GGGAAAGAAT TTTTTACATA AACGATGCCG CCTGTAGGGT TTTAGGTGTT
GATAAAGAAA AAATAATTGG ACAAAATGTA GTTGAAAATG TTCCTAATAC TAGATTGCAC
GTTGTTTTAA GAACAGGTGA AGCAGAATTC GACAAACTAC AGAGTTTAGG GGATAAAGTA
ATTTTAACTT CTCGTATCCC TATAAAAAAT GATAATAATG AAACTATTGC TGTTGCCGCT
GTTTTTAGAG ATATCACTAC ATTACAAAAG TTAGCTGAAG AGATCACTAA TTTAAGAGAA
ATGGAAGCTC TACTGAGTTC CATAATTGAT TCCACTTCAG ATGCAATTTC TGTCGCAGAT
CAAGAAGGTC GTGTGACTAT GGTCAACAGA GCTTACACAA GAATCACAGG ATTAACACCA
AGAGAGGTCA TTGGTAAACC TGCAACTATA GATTTGGCAG AAGGTGAAAG TTTACATATT
CAATGTGCAA AAGAGAAAAA ACCTATATAC AATGTAAAAA AAAGATTAGC CACGAACAAA
AAAGAAGTAG TAGCAAGCGT TACCCCACTT TTTGTTAAAA ATGAGTTTAA GGGAAGCGTC
GCCGTTATTC ATGACATTTC CGAAATTCAA AGATTGATAA ACGAATTAGA AGCTACAAAA
AGGATGTTGA AAAAAGAAAG TGCCACACAT ACCTTTGATG ATTTAGTCGT TAAATCTGAA
ATTATGAAAG ATGTTGTTGC CCAAGCAAGT AAAGTAGCCT CAGTAGACGT CAACCTTTTA
TTAATAGGCG AATTTGGAGT AGGGAAAGAG GTACTAGCAC AAGCTATTCA CAACGCAAGT
GCGAGGAAAG AGGGACCGTA TCTCAAATTA AACTTTTCTT TGATCCCAAG AGAAAGACAA
GAAGAATACC TTTTTGGGGA GAATAGTTAT CTGGCACAAG CGAATGAAGG GACCCTTTTT
TTGGAAAATA TTGATCTCAT GGATATAGAA ATGCAAAGAA AACTTTTAGC TTTCCTTAAA
GACAATGTTT TTGATACCAA TTATTACGAT TTTATTCCTG ATGTTAGGTT CATTTTTGCA
ACTACTGAAG ATTTAAAGAT TCTTTCTGGT TTGGGTAAAT TTTCTAAAGA GCTTTTATAC
AAAATTTCAG TAGTAAATAT AGAAGTTCCA CCGTTAAGAG AAAGAAAGGA AGACATTCCT
GAACTTGCTC AGCAACTATT ACATAATCTA AATAGAAAGT ATGGAAGAAT AGTTTATGGA
TTTACTGAAG ATGCCTTGAA GAAATTGATG AATTATTCGT GGCCTGGGAA CATAAGAGAG
TTGGAAAACG TTATTGACCG GGCTATGTTG GCAATGGACA ACAGCGATTC CATAGTTACT
TCCACGCACA TTCCCGATTT GATAGAAAAG GTTGAAGAAG TCACAGGAAC GCTTAAGGAA
ATGACAGAAG ATTTCGAAAA AAAGATAATT CTGGAAATCC TTGAAGCAAG TCACGGTAAT
AAAACAGAAG TTGCACGTAA ACTAGGGTTA ACTGTGAGAA ATCTTTATTA TAAGCTAGAT
AGGTATGGGA TCAAGTAA
 
Protein sequence
MKEIELMRYV LDQLQDGVMA IDERERIFYI NDAACRVLGV DKEKIIGQNV VENVPNTRLH 
VVLRTGEAEF DKLQSLGDKV ILTSRIPIKN DNNETIAVAA VFRDITTLQK LAEEITNLRE
MEALLSSIID STSDAISVAD QEGRVTMVNR AYTRITGLTP REVIGKPATI DLAEGESLHI
QCAKEKKPIY NVKKRLATNK KEVVASVTPL FVKNEFKGSV AVIHDISEIQ RLINELEATK
RMLKKESATH TFDDLVVKSE IMKDVVAQAS KVASVDVNLL LIGEFGVGKE VLAQAIHNAS
ARKEGPYLKL NFSLIPRERQ EEYLFGENSY LAQANEGTLF LENIDLMDIE MQRKLLAFLK
DNVFDTNYYD FIPDVRFIFA TTEDLKILSG LGKFSKELLY KISVVNIEVP PLRERKEDIP
ELAQQLLHNL NRKYGRIVYG FTEDALKKLM NYSWPGNIRE LENVIDRAML AMDNSDSIVT
STHIPDLIEK VEEVTGTLKE MTEDFEKKII LEILEASHGN KTEVARKLGL TVRNLYYKLD
RYGIK