| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmob_1952 |
|---|
| Symbol | |
|---|
| ID | 5757198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Petrotoga mobilis SJ95 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010003 |
|---|
| Strand | + |
|---|
| Start bp | 2161798 |
|---|
| End bp | 2163435 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641303148 |
|---|
| Product | PAS modulated sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_001568962 |
|---|
| Protein GI | 160903381 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAAA TAGAACTAAT GAGGTACGTT CTTGATCAGT TACAAGATGG AGTAATGGCA
ATAGATGAAA GGGAAAGAAT TTTTTACATA AACGATGCCG CCTGTAGGGT TTTAGGTGTT
GATAAAGAAA AAATAATTGG ACAAAATGTA GTTGAAAATG TTCCTAATAC TAGATTGCAC
GTTGTTTTAA GAACAGGTGA AGCAGAATTC GACAAACTAC AGAGTTTAGG GGATAAAGTA
ATTTTAACTT CTCGTATCCC TATAAAAAAT GATAATAATG AAACTATTGC TGTTGCCGCT
GTTTTTAGAG ATATCACTAC ATTACAAAAG TTAGCTGAAG AGATCACTAA TTTAAGAGAA
ATGGAAGCTC TACTGAGTTC CATAATTGAT TCCACTTCAG ATGCAATTTC TGTCGCAGAT
CAAGAAGGTC GTGTGACTAT GGTCAACAGA GCTTACACAA GAATCACAGG ATTAACACCA
AGAGAGGTCA TTGGTAAACC TGCAACTATA GATTTGGCAG AAGGTGAAAG TTTACATATT
CAATGTGCAA AAGAGAAAAA ACCTATATAC AATGTAAAAA AAAGATTAGC CACGAACAAA
AAAGAAGTAG TAGCAAGCGT TACCCCACTT TTTGTTAAAA ATGAGTTTAA GGGAAGCGTC
GCCGTTATTC ATGACATTTC CGAAATTCAA AGATTGATAA ACGAATTAGA AGCTACAAAA
AGGATGTTGA AAAAAGAAAG TGCCACACAT ACCTTTGATG ATTTAGTCGT TAAATCTGAA
ATTATGAAAG ATGTTGTTGC CCAAGCAAGT AAAGTAGCCT CAGTAGACGT CAACCTTTTA
TTAATAGGCG AATTTGGAGT AGGGAAAGAG GTACTAGCAC AAGCTATTCA CAACGCAAGT
GCGAGGAAAG AGGGACCGTA TCTCAAATTA AACTTTTCTT TGATCCCAAG AGAAAGACAA
GAAGAATACC TTTTTGGGGA GAATAGTTAT CTGGCACAAG CGAATGAAGG GACCCTTTTT
TTGGAAAATA TTGATCTCAT GGATATAGAA ATGCAAAGAA AACTTTTAGC TTTCCTTAAA
GACAATGTTT TTGATACCAA TTATTACGAT TTTATTCCTG ATGTTAGGTT CATTTTTGCA
ACTACTGAAG ATTTAAAGAT TCTTTCTGGT TTGGGTAAAT TTTCTAAAGA GCTTTTATAC
AAAATTTCAG TAGTAAATAT AGAAGTTCCA CCGTTAAGAG AAAGAAAGGA AGACATTCCT
GAACTTGCTC AGCAACTATT ACATAATCTA AATAGAAAGT ATGGAAGAAT AGTTTATGGA
TTTACTGAAG ATGCCTTGAA GAAATTGATG AATTATTCGT GGCCTGGGAA CATAAGAGAG
TTGGAAAACG TTATTGACCG GGCTATGTTG GCAATGGACA ACAGCGATTC CATAGTTACT
TCCACGCACA TTCCCGATTT GATAGAAAAG GTTGAAGAAG TCACAGGAAC GCTTAAGGAA
ATGACAGAAG ATTTCGAAAA AAAGATAATT CTGGAAATCC TTGAAGCAAG TCACGGTAAT
AAAACAGAAG TTGCACGTAA ACTAGGGTTA ACTGTGAGAA ATCTTTATTA TAAGCTAGAT
AGGTATGGGA TCAAGTAA
|
|---|
| Protein sequence | MKEIELMRYV LDQLQDGVMA IDERERIFYI NDAACRVLGV DKEKIIGQNV VENVPNTRLH
VVLRTGEAEF DKLQSLGDKV ILTSRIPIKN DNNETIAVAA VFRDITTLQK LAEEITNLRE
MEALLSSIID STSDAISVAD QEGRVTMVNR AYTRITGLTP REVIGKPATI DLAEGESLHI
QCAKEKKPIY NVKKRLATNK KEVVASVTPL FVKNEFKGSV AVIHDISEIQ RLINELEATK
RMLKKESATH TFDDLVVKSE IMKDVVAQAS KVASVDVNLL LIGEFGVGKE VLAQAIHNAS
ARKEGPYLKL NFSLIPRERQ EEYLFGENSY LAQANEGTLF LENIDLMDIE MQRKLLAFLK
DNVFDTNYYD FIPDVRFIFA TTEDLKILSG LGKFSKELLY KISVVNIEVP PLRERKEDIP
ELAQQLLHNL NRKYGRIVYG FTEDALKKLM NYSWPGNIRE LENVIDRAML AMDNSDSIVT
STHIPDLIEK VEEVTGTLKE MTEDFEKKII LEILEASHGN KTEVARKLGL TVRNLYYKLD
RYGIK
|
|---|
| |