Gene Pmob_1941 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmob_1941 
Symbol 
ID5756853 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePetrotoga mobilis SJ95 
KingdomBacteria 
Replicon accessionNC_010003 
Strand+ 
Start bp2151942 
End bp2152991 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content38% 
IMG OID641303137 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_001568951 
Protein GI160903370 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.000929382 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCTCAG AAAAAGTAGT GGATGTTGGC GGGGTTAAAA TTGGTGGGAA GTATCCCATC 
GTTATTCAAA GTATGACGAA TACGGATACC GCTAATATTG AGCAAACATT GTTTCAAGTT 
GAACGATTGA AAAATTCAGG TGCCCAGATT GTAAGGGTAT CGGTGAGAAG TAAGGATGAC 
ATTCAACCTT TTGGTGAAAT CGTTAAGAAA TCCCAAGTGC CTTTAGTTGC AGATATTCAT 
TTTGACTACA GGTTAGCTAT AGAATCTATT AAGGCCGGTG CTTCGAAAGT AAGAATAAAC 
CCAGGCAACA TTGGTTCAGA TGTTAAAATA CGAGAAATAG TTAAAGTTGC TAAAGAGTAC 
AACGTCCCAA TAAGGGTCGG ATCTAATTCT GGTTCGATCG CTAAGGAATT TTCTGATTTA 
CCTAGACATA AAGCATTGGC TGAAAGCGCT TTAAAAGAAG TTCGATTGCT AGAAAAAGAA 
GGTTTTTACG ATATTGTCGT CTCTGTGAAA TCTGTTGATG CTAAAGAAAC TTTTGTTGCC 
AATCAATATC TTTCGAGGTT GATACCTTAT CCTTTTCATA TAGGAGTTAC TGAAGCAGGT 
GTGTTTGAGG ATGCAGTTAT ATTGTCATCA GCAGGTTTAG GTTCTTTGCT TATAAACGAC 
ATCGGAGATA CAATCAGAAT ATCCATCAGC GGGGATCCGA TCAGAGAAGT TGAATTGGCA 
AAAGATTTGC TAATAGCATT AGGCTTGAAA ATAGGGGTAA GAGTAATAGC CTGTCCGACT 
TGTGCAAGGA CGGAAATCGA CGTTGAAGGA TTAGCCTACG AAGTAAAAAA AATGTTAAAA 
GGTAAAGAGG TTAAAAAAAA TATTACCGTA GCGGTCATGG GATGTGTTGT TAACGGTCCT 
GGTGAAGCTA AACACTCTGA TATCGCCATA GTTGGAACCA AAAATTCATC AGCGGCTATT 
TTCCTTAAAG GGGAACTTTT CGGTACTTTT AAGAGAAGTG AGATAAGAGA GAAACTTTTT 
GAGATTATAG AAGAAATTCA GAATTCTTAA
 
Protein sequence
MFSEKVVDVG GVKIGGKYPI VIQSMTNTDT ANIEQTLFQV ERLKNSGAQI VRVSVRSKDD 
IQPFGEIVKK SQVPLVADIH FDYRLAIESI KAGASKVRIN PGNIGSDVKI REIVKVAKEY 
NVPIRVGSNS GSIAKEFSDL PRHKALAESA LKEVRLLEKE GFYDIVVSVK SVDAKETFVA 
NQYLSRLIPY PFHIGVTEAG VFEDAVILSS AGLGSLLIND IGDTIRISIS GDPIREVELA 
KDLLIALGLK IGVRVIACPT CARTEIDVEG LAYEVKKMLK GKEVKKNITV AVMGCVVNGP 
GEAKHSDIAI VGTKNSSAAI FLKGELFGTF KRSEIREKLF EIIEEIQNS