| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmob_1884 |
|---|
| Symbol | |
|---|
| ID | 5757534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Petrotoga mobilis SJ95 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010003 |
|---|
| Strand | - |
|---|
| Start bp | 2081383 |
|---|
| End bp | 2082129 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 641303079 |
|---|
| Product | CRISPR-associated Cas family protein |
|---|
| Protein accession | YP_001568894 |
|---|
| Protein GI | 160903313 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1583] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
|---|
| TIGRFAM ID | [TIGR01877] CRISPR-associated endoribonuclease Cas6 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.84969 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTAA ACGTTCAATT TTCTTTAAAT AGTTTAATAC TTCCATTAAA TTACAATCAT
ATTATTCAAG CTTTCATTCT TGATTTAATA GATAATGCCG AATATAGAAA CTTCATTCAT
AACGAGGGTT TTAGCTATAA TAAAAGAAAG TACAAATTGT TTTCTTTTTC AAGGCTAAGC
GGAAAATTCA GCTTAAATCA AAAGGATAAA ACAATAGAGT TTTCTGATAA TGTTTCTTTG
AAAATTTCCT CTCACGACAA GAACTTAATT CAGTATTGTG CAGACTCGCT TTTATTTAAA
GATGATTTTG AACTATTAGG TCAAAAGATT CATGTAGAGA AGTTAGAGTA CGATGATTTG
GAAATAAAAA GCGATAAAAT AAAGGTAAAG ACTTTATCCC CCATTACTAT TTATTCTACG
ATTGTACAAA ATTCTTCAAA AAAGACTATT TACTTTTCCC CCAGCGAAGA TCAATTTTCA
AAATTAATAA AGGAAAATTT AATAAAAAAA TATCTTGCCT ATTACGATTC ATATCTTTCA
AAAAAAATAA GTAATGATGA ATTCGTTATA AAAGAAGCTG ATCAGAAAGG CTCTAAAATG
ATCATAACAA AGTATAAAAA TTTTATTATT AAAGGTTGGC ATGGAGTTTT TGAAATTCAA
GGGAATCCAA GTTTGTTGAA AATTGGTTAC GATTCTGGTT TTGGAGCAAA AAACTCCCAA
GGGTTTGGGT TAGTCGAAGT TATATGA
|
|---|
| Protein sequence | MRLNVQFSLN SLILPLNYNH IIQAFILDLI DNAEYRNFIH NEGFSYNKRK YKLFSFSRLS
GKFSLNQKDK TIEFSDNVSL KISSHDKNLI QYCADSLLFK DDFELLGQKI HVEKLEYDDL
EIKSDKIKVK TLSPITIYST IVQNSSKKTI YFSPSEDQFS KLIKENLIKK YLAYYDSYLS
KKISNDEFVI KEADQKGSKM IITKYKNFII KGWHGVFEIQ GNPSLLKIGY DSGFGAKNSQ
GFGLVEVI
|
|---|
| |