| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmob_1483 |
|---|
| Symbol | polC |
|---|
| ID | 5758399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Petrotoga mobilis SJ95 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010003 |
|---|
| Strand | - |
|---|
| Start bp | 1597006 |
|---|
| End bp | 1601172 |
|---|
| Gene Length | 4167 bp |
|---|
| Protein Length | 1388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 641302678 |
|---|
| Product | DNA polymerase III PolC |
|---|
| Protein accession | YP_001568509 |
|---|
| Protein GI | 160902928 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
|---|
| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01405] DNA polymerase III, alpha chain, Gram-positive type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGATA TTAGAAATTT CTTGATGGAA AATGTAGGTT TTGTTCCTTT TGAACTAAGT
GGAGAAATCA TTGTAAAAGA CGAAGAGGCA GAAATCAATT TACAGGATAT AGGTAAAGAT
ATCGATGAAG CTTCATTGAA GCTTTTCTTT AGTAGACTTC TCAAGAGAGA AGTCAAAATC
TCTTTTACAA ATGATGAAGG ACCTGAATTT ATCGTAAGAA ATTGGCAACA GTTGATAATG
AATCATCGTT TAAAAGATTA TCTAAGACTT TTAAAGCCAG AATATAACCA AAAAAACAAA
ATAGTATTTA AAACGTACTC ACCGATAGTA ATAAACAGGC TAACAAAAGA AAAAGAGGAA
TTGGATAATA TTTTATTTAA ATATCTCGGT GACAGAATCC CTTATCAAAT CATGATAGAT
GAAAGTTTAA AACCCACTTT TATCGATGAT AGTTATCACA GGTCTGATAC CGAGGATAGT
AACTTGATGT CTAATTCAGA TATTTCCAAA AAATTAGATG ATACAGAAAG AGTCGTAATT
ATGGGAAGGG ATTTTAAAAA GGTACCACAA CCGTTATCGT TACTTCCTTC AAATGAAGGA
AGTAACGTGG TAGTTAACGG GAAAATATTT TACAAAGAGT ACAATGAAAA AGGTCCTATA
TCTACTCTTT ATATCACTGA TAAAAAAAGT TCCGCGGTTG TAAAAACATT TTCTGAAACG
GCTAATAATT TAAACAATGA ATTAGATGAG GGAGATAACG TATTAATTGA AGGAAGCATT
TTTTATGATT CTTTTAGTCA TGAATTTGCA ATTAGACCTA CAAATATAGT TAAGTTAAAA
GAAGAAACTC TCGAAAGGAA AGATAACTAC CCCACAAAAA GGGTGGAGCT TCATTTGCAT
TCAAAACTAA GTGCTATGGA AGGTTTACTC GATGTGGGCG AAATAGTGAA GACCATAAAA
AATTGGGGCC ATAAGGCGGT AGCTATAACT GATTCTGGTG TTGTTCAAAG TATTCCAGAA
TTTTATGAAA AAGCGGTCGC AGTAGGTATT AAACCAATTT TTGGGATTCA AGCATATGTC
GTTGATGAAT TTGTAAATAT TATAAGTTTG CTGACAAAAG ATAAAAAAAT AAGTGAAACT
GAGTTTGTTG TTTTTGACTT GGAAACCACT GGATTAGAAC CTGCCATGAA CGAAATTATT
GAGATTGGTG CCGTGAAAAT AAAGAATATG AAAATCGTGT CTAAGTTTCA TCGTTTGGTG
AAGCCAAGAA AACCTGTCTC AAACTTTACA AGTAATTTCA CAGGTATAAC GAATCAGATG
CTGGAAGTTG AAAAACCGAT AGAGGAAGTC CTACCTCAAT TTTTGAGTTT CATAGAAGGT
GCGGTTTTAG TTGCACATAA CGCAATTTTT GATTACCGTT TTATACGGGA ATGGGTTAGA
AGAGTTTATA ATGAACACTT TGAGCAAACT TATATAGATA CCGTAGCCCT TTCAAAATCC
TTGTTAACTT TGAAAAGCTA TGGCTTGGCT AAGGTAGTTG AGGAGCTAAA ACTCGGTAGT
TTTGAACACC ATAGGGCTCA TGAAGACGCT AATATAACCG CTTTGGTGTT TTTAAAACTT
ATAGAAATGG CAAAATCCCA GAATGTGGAA ATGTTGTCTG ATCTTGAAAA ATTAAAAAAA
TTCATAGATT TTAAGAGAAT CCAACCGAAC GATACGACTA TTTTGGTCAA AAACAAAACC
GGTCTTAAAA ACCTTTATAA ACTTGTTTCA AATGCCCATG TAAAATATTT TTACAGAGTA
CCTAGGATTT TAAAAAGTGA ACTATCCCGA ATGAGAGAAG GTTTGCTTAT AGGTAGTAGT
GGAACCGAAG ATGGAGAAAT CTTTCAGACC TATCTCAGAG GTGGATCTCA TGATGAAATT
ATCGAAATCG CCAAATTTTA CGATTATCTG GAATTAACTC CATTGGATGC TTTATCAGAT
AAAACTATTT CAGAAGAACA ATTAAAAAAG ATCTATCAAG ATATATATAA CCTTGGTAAC
GAATTGAACA TGCCAGTTGT AATGGTCTCA AACGCTCATT ACTTAGATAA AGAAGACCAA
ATCTTTTACA ACGCATTAAA AGTTGGGGAA AAGAGAAAGA CTTCTTCTGC ACACAGATAT
TTGCGTACAA CTGATGAGAT GATAGAAGAA GCTCAAAGAA TTTTTGGGGA TAAAGAAATT
GCCGAGAAAA TTGTCATAAC CAATACTAAT GAGATTGCAG ATCAAATAGA AATAATAAAG
CCTCTTAGTA ACAAACTTCA TCCTCCAAAA ATAGAGAATG CAGAAGTAGA GATAGAAGAA
CTTGCGAAGA AAAAAGCGTA TGAAATATAT GGGAATCCTT TACCAGAAAT TGTTGAAAGC
CGATTGAATA GAGAACTAGA ATCCATCGTA AAACATGGTT ATGCGGTACT TTATCTAATT
GCCCAAAAAA TCGTACAAAA ATCTTTAGAA GATGGGTACT TGGTTGGTTC CAGGGGTTCC
GTTGGTTCTT CTTTGGTGGC TACTATGTTG GGAATAACTG AGATAAATCC TCTACCTCCT
CATTATATAT GTCCAAGTTG TAAAAATGTG GAGTTTTTTG ATAAAGAGGA AATAGGTTCT
GGGTATGATC TTGTCGATAA AAAATGTGAA AAATGTGGAG CAAAAATGAA AAAAGATGGC
CAAGATATCC CATTTGAAAC ATTCATGGGA TTTGAAGGTG ACAAAATACC CGATATAGAT
TTGAATTTTT CTGGAGATTA CCAAAACATG GCACATAAAT ACATAGAAAA AATGTTCGGA
GAAGATCATG TTTTTCGAGC GGGTACTATA TCAACAATTG CAGATAGAAC TGCCTTTGGC
TTCGCTAAAA AATATTGCGA AGAGCAGGGG ATAGTAAAAA ATAGTGAAAT AATGAGAATA
GTCAAGGCGA TAACAGGGGT AAAACGAACG ACAGGACAAC ATCCGGGTGG ATTAATGATA
GTTCCAAAAG AAGAGGAAGT TTACGATTAC ACACCGATTC AGTTCCCCGC CAATGATAAT
AAATCAAATG TTCAAACTAC TCATTTTGAT TACCACGTAA TACATAACGA TCTTGTAAAG
TTAGATGCAC TCGGGCACGA TGACCCTACA TTCATTAAAA TGATGTCTGA TTTAACTGGG
GTAGACCCCA TGACTATTCC CATGGACGAT AAGAAAACCT TGAGTTTGTT CTCTTCTACA
AAAGCATTGA AAATAGACTT AAAAAATGAA TTGGGTACAA CCGTTGGAAC GTTAGGGGTC
CCGGAGTTTG GTACTACTTT TGTCAGAATG ATGTTGGAAG ACACAAGGCC AAAGAGTTTT
TCTGAATTGG TAAGAATATC TGGCTTATCA CATGGCACCG ATGTATGGGC TGGAATAGCT
AAAAACTGGA TAGACAGGAA GATTGCAACT TTAGACGAGG TAATTTCTTG TAGAGATGAT
ATAATGAATT ATTTACTATC CAAAGGCGCT CCACCCAAAA GTGCTTTTTC GATAATGGAA
AAGGTGAGAA AAGGCAAAGG TATCGACGAA GAAGACATTG AACTAATGAA AGAATTAAAA
GTGCCTGAAT GGTTCATCAT CTCTTGTCAA AAAATTAAAT ATCTCTTTCC AAAAGCTCAT
GCGGCTGCTT ACGTTAGTAT GGCCTTTAGA ATCGCATGGT TTAAAGTTCA TTATCCTTTA
GCTTTTTATT CTACGTATTT TACCGTCAAA GGTGATGAAT TCAACTTAAA AGTCATTTTC
TCCGGTAGAG ATGCCATCAA AAAAAGGATA TTTGAACTGC GTAATATGGA TTTGGATGTT
CGCAAAAAAA ATGAGATGGT CGTATTAGAG TTGGCATTGG AAATGATGCT CAGAGGTTAT
AATTTTAAAA TGGTTGATTT GAACAAGTCT GATTCAAAAA AGTTTTTGAT AGATGGAAAT
TCTCTTGTTG TGCCTTTTAT CAAGGTACCT AATCTAGGCG AAAAAGCTGC AGAAAATATT
ATTAAATCAA GAGAGAGCGG GTTTAAATCC ATAGAAGATT TTGCTGCAAA GAGTGGGTGT
AACAGAACGA ACGTTGAGAC TTTAAGGGAA TTAGGAGTAT TGAAAGACTT GCCAGAAACA
AATCAAATGT CACTATTTAA AGGATGA
|
|---|
| Protein sequence | MQDIRNFLME NVGFVPFELS GEIIVKDEEA EINLQDIGKD IDEASLKLFF SRLLKREVKI
SFTNDEGPEF IVRNWQQLIM NHRLKDYLRL LKPEYNQKNK IVFKTYSPIV INRLTKEKEE
LDNILFKYLG DRIPYQIMID ESLKPTFIDD SYHRSDTEDS NLMSNSDISK KLDDTERVVI
MGRDFKKVPQ PLSLLPSNEG SNVVVNGKIF YKEYNEKGPI STLYITDKKS SAVVKTFSET
ANNLNNELDE GDNVLIEGSI FYDSFSHEFA IRPTNIVKLK EETLERKDNY PTKRVELHLH
SKLSAMEGLL DVGEIVKTIK NWGHKAVAIT DSGVVQSIPE FYEKAVAVGI KPIFGIQAYV
VDEFVNIISL LTKDKKISET EFVVFDLETT GLEPAMNEII EIGAVKIKNM KIVSKFHRLV
KPRKPVSNFT SNFTGITNQM LEVEKPIEEV LPQFLSFIEG AVLVAHNAIF DYRFIREWVR
RVYNEHFEQT YIDTVALSKS LLTLKSYGLA KVVEELKLGS FEHHRAHEDA NITALVFLKL
IEMAKSQNVE MLSDLEKLKK FIDFKRIQPN DTTILVKNKT GLKNLYKLVS NAHVKYFYRV
PRILKSELSR MREGLLIGSS GTEDGEIFQT YLRGGSHDEI IEIAKFYDYL ELTPLDALSD
KTISEEQLKK IYQDIYNLGN ELNMPVVMVS NAHYLDKEDQ IFYNALKVGE KRKTSSAHRY
LRTTDEMIEE AQRIFGDKEI AEKIVITNTN EIADQIEIIK PLSNKLHPPK IENAEVEIEE
LAKKKAYEIY GNPLPEIVES RLNRELESIV KHGYAVLYLI AQKIVQKSLE DGYLVGSRGS
VGSSLVATML GITEINPLPP HYICPSCKNV EFFDKEEIGS GYDLVDKKCE KCGAKMKKDG
QDIPFETFMG FEGDKIPDID LNFSGDYQNM AHKYIEKMFG EDHVFRAGTI STIADRTAFG
FAKKYCEEQG IVKNSEIMRI VKAITGVKRT TGQHPGGLMI VPKEEEVYDY TPIQFPANDN
KSNVQTTHFD YHVIHNDLVK LDALGHDDPT FIKMMSDLTG VDPMTIPMDD KKTLSLFSST
KALKIDLKNE LGTTVGTLGV PEFGTTFVRM MLEDTRPKSF SELVRISGLS HGTDVWAGIA
KNWIDRKIAT LDEVISCRDD IMNYLLSKGA PPKSAFSIME KVRKGKGIDE EDIELMKELK
VPEWFIISCQ KIKYLFPKAH AAAYVSMAFR IAWFKVHYPL AFYSTYFTVK GDEFNLKVIF
SGRDAIKKRI FELRNMDLDV RKKNEMVVLE LALEMMLRGY NFKMVDLNKS DSKKFLIDGN
SLVVPFIKVP NLGEKAAENI IKSRESGFKS IEDFAAKSGC NRTNVETLRE LGVLKDLPET
NQMSLFKG
|
|---|
| |