| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_6055 |
|---|
| Symbol | trmE |
|---|
| ID | 5751683 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 6762896 |
|---|
| End bp | 6764317 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641301197 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_001567068 |
|---|
| Protein GI | 160901486 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCCC GCCACAACGA CCCCATCGCC GCCATCGCCA CCGCCCCGGG GCGGGGTGCC
GTGGGCATCG TGCGTGTGTC CGGCAAGGGC GTGGCGCCGC TGGTGCGGGC GCTGTGCGGG
CGCGACCTCA AGCCGCGCGA GGCCACCTAT CTGCCGTTTC GCGATGCCCA GGGCGGCCCC
ATCGACCACG GCCTGGCCCT GTTCTTCCCG GCGCCGCACA GCTACACCGG CGAGGATGTG
CTGGAGTTGC AGGCCCACGG CGGCCCCGTC GTTTTGCAAC TGCTGCTGGC GCGCTGCCTG
GAGGCTGCGC AAGACCCGCG CGAAGGCCAT CGCAGCGTGC TGCCGGGCCT GCGCCTGGCC
CAGCCCGGTG AATTCACCGA GCGTGCCTTT CTCAACGACA AGATCGACCT GGCCCAGGCC
GAGGCCATTG CCGACCTGAT CGACGCCAGC ACCGAGGCCG CCGCGCGCAG TGCGAGCCGT
TCGCTGTCGG GCGCTTTTTC CGAGGAAATC CATGGCCTGC GCGACGCGCT GGTGCACCTG
CGCATGCTGG TCGAGGCCAC GCTGGACTTT CCCGAGGAAG AGATCGACTT CCTGCAAAAG
GCCGATGCCA GCGGCCAGCT CGCGCGGCTG CGCGGCAAGC TGGACCAGGT GCTGTCGCGC
GCCCACCAGG GTGCGCTGTT GCGCGAAGGC ATCAAGGTCG TGATCGCGGG CCAGCCCAAT
GCGGGCAAGA GCTCGCTGCT CAACGCGCTG GCCGGTGCGG AGCTGGCCAT CGTCACACCG
ATTGCCGGCA CCACGCGCGA CAAGGTGCAG CAGACCATCC AGATCGAAGG CGTGCCCCTG
CATGTGATCG ACACGGCAGG CCTGCGCGAG AGCAGCGACG AGGTCGAGCG CATCGGCATC
GCGCGCGCCT GGGACGAGAT CGCCGCGGCC GATGCCGTGC TCTTCCTGCA CGACCTCACA
CGCATGGGCG AGCACGACTA CCTCGCTGCC GATGCCGCCA TTGCCGAAAC CCTGGCCCAG
AAGCTGCCGC GCCAGGTGCC CGTCATCGAT GTATGGAACA AGACCGATCG CGCGGAACCC
GCCCGGATGC AGGAGCATGG CGGCCGTGAA GGCAGCGTGG CACTGTCGGC ACGCACGGGC
GATGGCCTGG ATGCACTGCG CCGGCGCCTG CTGGACGTGG CCGGCTGGCA GTCGGCCCCA
GAAGGCCTGT ACCTGGCGCG CGCGCGCCAT GTGGAGGCAC TGCAGGCCGT GGCCGCCCAC
CTGCAGGAGG CCGAGCTGCA GCTGGCGGCC CAGGCCGCCC ACCTGGACTT GCTGGCCGAG
GAACTGCGCC TGGCCCAGGT CTCGCTGAAC TCCATCACCG GGGAATTCAG CTCCGACGAT
CTGCTGGGCG TGATCTTTTC CAGCTTCTGC ATCGGCAAGT GA
|
|---|
| Protein sequence | MLPRHNDPIA AIATAPGRGA VGIVRVSGKG VAPLVRALCG RDLKPREATY LPFRDAQGGP
IDHGLALFFP APHSYTGEDV LELQAHGGPV VLQLLLARCL EAAQDPREGH RSVLPGLRLA
QPGEFTERAF LNDKIDLAQA EAIADLIDAS TEAAARSASR SLSGAFSEEI HGLRDALVHL
RMLVEATLDF PEEEIDFLQK ADASGQLARL RGKLDQVLSR AHQGALLREG IKVVIAGQPN
AGKSSLLNAL AGAELAIVTP IAGTTRDKVQ QTIQIEGVPL HVIDTAGLRE SSDEVERIGI
ARAWDEIAAA DAVLFLHDLT RMGEHDYLAA DAAIAETLAQ KLPRQVPVID VWNKTDRAEP
ARMQEHGGRE GSVALSARTG DGLDALRRRL LDVAGWQSAP EGLYLARARH VEALQAVAAH
LQEAELQLAA QAAHLDLLAE ELRLAQVSLN SITGEFSSDD LLGVIFSSFC IGK
|
|---|
| |