Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_6017 |
Symbol | |
ID | 5751648 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 6721439 |
End bp | 6724573 |
Gene Length | 3135 bp |
Protein Length | 1044 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641301159 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_001567030 |
Protein GI | 160901448 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTGGG ACGAGATCTT TGTGCTCGGA TGGGCACCCC ATCCGCAGTG GTTCCAGTGG CTGCATCCGG GCCTGGTGGC GCTGTCGGTG GTGGTGGCCG TGGCCACGTC GATGATGGCC ATGCAGATCG CGGGGCTGGC GCGCAATGCC GCCTCGCCCC GGATACGCCG CACCGGCGTG CTGACCGGCG CCTTCTGCCT GGGCGCCGGC ATCTGGGCCA TGCACTTCAT CGGCATGCTT GCCTTCGTGC CCTGCACCTT CGGCGACTAC GACCCCTGGA TCACCGCGCT GTCCATGCTG CCCAGCATGC TGGCGTCCTG GCTGGCGCTG ACGCTGATGG TGCGGCCCCG GCTGTCCGCC CAGGCGCTGG TCGGCGGCGG CGTGCTCATG GGGCTGGGCA TTGGCTCCAT GCACTACATC GGCATGGCGG CGGCCCAGAC CTGGAGCCTG ATGCTCTACG ACCCCTGGGG CGTGCTGCTG TCGGTGATCG TGGCCGCCAC CATGGCCATG CTGTCGCTGT GGGTGCGCTT TCGGCTGGGC AACACGGGCC GCCTGTGGCC CACCCTGGTC GCCGGCATAG TCATGGGCCT GGCCATTTCC TGCATGCACT ATGCGGGCCT GTACGCACTG CGCCTCAAGC CCGGTATCGA TGCGCTGGCG CAGCAGGAGG CGCCCACGCA TGCGCTGCTG GTGTTCTCCA TCGTGGGCGT GGTGGTGCTG GTCTTCGGCC TGGTGCTCGC GGTCAACATG ACGCTGCGCT ACCGCCAGAT CTACCGGCAG GTCCAGCGCA GCGAGTCGCG CCTGCGCGCC GTGGTGGATA CGGCGGTGGA CGGCATCGTG ATGATCGACG GGCGCGGCAG CATCGTCTCG TTCAACGGCG CGGCCGAGCG GCTGCTGGGC TGGACGGCGC AGGAGGTGCT GGGCCGCAGC GCCAGCCTGC TCATGCCCGC GTCGGGCTGC GATGGTGAGG GCGGCTCGCT GGAAAAGCAG CTGGCCGCGG GCTTTGCAGG CCTGCTCGGC TCCAGCCGAG ATGTCCATGC CCTGCACAAG GACGGCACGC AGATCGCCGT GCGCCTGGCC GTGGGCCGGG TGGCGATTGC GGGCGATCCG CTGTTCGTGG GCTTTGTGAC CGACATCCGC GAGCGCCGCC AGATGCTGCA GTCGCTGCGC CGCAGCGAGG AGCAGTACCG CACCCTGATC AACAACGTGC CGGGCACCAC CTTCCGCTGC CTGTACGACG GCAAGTGGAC GCCGCTGCTG CTCAGCCGCT CCATCAAGGA GCTGACCGGC TGGACGGAGC AGGACTTCAC GGATGGACTC ACGGGCTGGG ACCGGCTCAT CCATGCCGAG GACCGCGACC GGCTGGAGGC TGCGGTCTCG CATTCGCTGT CACGGCGCCA GACCTACAAC GCCGACTACC GCCTGCTGCA CCGCGACGGC AGCACCCGCT GGGTGTCCGA GACCGGGCGC GGCGTCTTCA ACGAGCACGA CGAGCTGACC TGGATCGACG GCGTGATCAT GGACCAGACG GCGGCGCGCG CGCGCAATGC CGAGTTCGAG GGCACGGTGC GCGCCATCGA CCTGTCGCTG GCCACCATCG AGTACGACCT GCTGGGCCAA GTGCTGCGCG CCAACCGCAA TTTCCTGGAC CTGTTCGGCT ACCGGCTCGA CGAGGTCGCG GGCCGCCACC ACGGCATGTT CTGCGAGCCC GGCTATGCCC ACACGCCCGA GCATGAGCAG TTCTGGCGCC GCCTGGCCGA GGGCGAGTTC CAGGCCGGCG AATTCCTGCG CTGCGGGCGC GAGGGGCGGC GCATCTGGGT GCAGGCCACC TACAACCCCA TACGCGACGC CGACGGCCGG CCCTACAAGA TCGTCAAGCT GCTCACCGAC ATCAGTGCCC AGCGCAAGCT GGCCCAGGAG CTGGTGCTGG CCAAGGAGCA TGCCGAGGCG GCCGCCGCCG CGCGCAGCAC CTTCCTGGCC AACATGAGCC ACGAAATCCG CACGCCCATG AACGCCATCA TCGGCTTCAC CGAGGCGCTG CGCGAAACCG CCCTGCAGCC CACGCAGGCG CGCTACCTGG ACACGGTGCA CTACGCGGCG CGCTCCATGC TGCGCCTGCT CAATGACATC CTGGACACGG CCAAGCTCGA CAAGGGCGCG GTGGAGCTGG AGATCGAGGA TTTCTCGGTG CGCGAACTGT GCCAGCAGAT CCTGGCGTCG CTGCGCATCA CGGCCGACCG CAAGGGCCTG GACCTGCGCC TGGACTACGA CCCGCACACA CCGGCCGCGC TGCGCGGCGA CGGCATGCGC GTGCAGCAGA TCCTGGTGAA CCTGCTGGGC AATGCCGTGA AGTTCACCGA GCGTGGCCAT GTGCTGCTGC GCGTGCGCTA CGAGCAGGGC GTGCTGCAGC TCGATGTGCA TGACACGGGC ATCGGCATCG CGCCCGAGAA GATCCACCGC ATCTTCGACC CCTTCGCCCA GGCCGACGCC TCGACCACGC GGCGCTTTGG CGGCACGGGC CTGGGCACGA CCATCTCGCG CCAGCTGGCC GAGCTCATGG GCGGCAGCAT CCAGCTGCAC AGCACCGTGG GCGTGGGCAC GGTGTTCGAG GTGCGCCTGC CCCTGCCCGT GGGCGAGAAC CAGCTGCCCG AGCGTGGCGC GGTCAGCCGC GGCCTGCCGC CGCTGCACAT CCTGGCCGTG GACGATGTGC CCGAGAACCT GGAGCTGCTG CAGATCAACT TCTCCAGCCA GAACCACCAG ATGGCGCTGG CGCATGACGG CGCCGAGGCG CTGCGCCGCG TGCAGGCGCA GGAGCCGCCC TTCGACGTGG TGCTGATGGA CCTGCAGATG CCGGGCATGG ACGGCCTGGC GGCGGCGCGT GCCATCCGCG TCTGGGAGCG GCAACTGCAG CGCCGGCCCG TGCCCATCGT CGCGCTGTCG GCCAGCGTGC TGGAGAAGGA CCGCAGCGAC GCCAGCGCCG CCGGCATGGA CGGCTTTGCC TCCAAGCCGC TGGACATGGC GCGGCTGCAG GCCGAGATCG CGCGGCTGCT GTCGCTGCAG GTGGCGCTCA AGGAGGCCAG GCCGCCCGCG CCCGCCAGTG CCCAGGCGGG GCTGCCCGAT GTCACGGTGG ACTAG
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Protein sequence | MNWDEIFVLG WAPHPQWFQW LHPGLVALSV VVAVATSMMA MQIAGLARNA ASPRIRRTGV LTGAFCLGAG IWAMHFIGML AFVPCTFGDY DPWITALSML PSMLASWLAL TLMVRPRLSA QALVGGGVLM GLGIGSMHYI GMAAAQTWSL MLYDPWGVLL SVIVAATMAM LSLWVRFRLG NTGRLWPTLV AGIVMGLAIS CMHYAGLYAL RLKPGIDALA QQEAPTHALL VFSIVGVVVL VFGLVLAVNM TLRYRQIYRQ VQRSESRLRA VVDTAVDGIV MIDGRGSIVS FNGAAERLLG WTAQEVLGRS ASLLMPASGC DGEGGSLEKQ LAAGFAGLLG SSRDVHALHK DGTQIAVRLA VGRVAIAGDP LFVGFVTDIR ERRQMLQSLR RSEEQYRTLI NNVPGTTFRC LYDGKWTPLL LSRSIKELTG WTEQDFTDGL TGWDRLIHAE DRDRLEAAVS HSLSRRQTYN ADYRLLHRDG STRWVSETGR GVFNEHDELT WIDGVIMDQT AARARNAEFE GTVRAIDLSL ATIEYDLLGQ VLRANRNFLD LFGYRLDEVA GRHHGMFCEP GYAHTPEHEQ FWRRLAEGEF QAGEFLRCGR EGRRIWVQAT YNPIRDADGR PYKIVKLLTD ISAQRKLAQE LVLAKEHAEA AAAARSTFLA NMSHEIRTPM NAIIGFTEAL RETALQPTQA RYLDTVHYAA RSMLRLLNDI LDTAKLDKGA VELEIEDFSV RELCQQILAS LRITADRKGL DLRLDYDPHT PAALRGDGMR VQQILVNLLG NAVKFTERGH VLLRVRYEQG VLQLDVHDTG IGIAPEKIHR IFDPFAQADA STTRRFGGTG LGTTISRQLA ELMGGSIQLH STVGVGTVFE VRLPLPVGEN QLPERGAVSR GLPPLHILAV DDVPENLELL QINFSSQNHQ MALAHDGAEA LRRVQAQEPP FDVVLMDLQM PGMDGLAAAR AIRVWERQLQ RRPVPIVALS ASVLEKDRSD ASAAGMDGFA SKPLDMARLQ AEIARLLSLQ VALKEARPPA PASAQAGLPD VTVD
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