| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_6017 |
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| Symbol | |
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| ID | 5751648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 6721439 |
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| End bp | 6724573 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641301159 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001567030 |
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| Protein GI | 160901448 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTGGG ACGAGATCTT TGTGCTCGGA TGGGCACCCC ATCCGCAGTG GTTCCAGTGG
CTGCATCCGG GCCTGGTGGC GCTGTCGGTG GTGGTGGCCG TGGCCACGTC GATGATGGCC
ATGCAGATCG CGGGGCTGGC GCGCAATGCC GCCTCGCCCC GGATACGCCG CACCGGCGTG
CTGACCGGCG CCTTCTGCCT GGGCGCCGGC ATCTGGGCCA TGCACTTCAT CGGCATGCTT
GCCTTCGTGC CCTGCACCTT CGGCGACTAC GACCCCTGGA TCACCGCGCT GTCCATGCTG
CCCAGCATGC TGGCGTCCTG GCTGGCGCTG ACGCTGATGG TGCGGCCCCG GCTGTCCGCC
CAGGCGCTGG TCGGCGGCGG CGTGCTCATG GGGCTGGGCA TTGGCTCCAT GCACTACATC
GGCATGGCGG CGGCCCAGAC CTGGAGCCTG ATGCTCTACG ACCCCTGGGG CGTGCTGCTG
TCGGTGATCG TGGCCGCCAC CATGGCCATG CTGTCGCTGT GGGTGCGCTT TCGGCTGGGC
AACACGGGCC GCCTGTGGCC CACCCTGGTC GCCGGCATAG TCATGGGCCT GGCCATTTCC
TGCATGCACT ATGCGGGCCT GTACGCACTG CGCCTCAAGC CCGGTATCGA TGCGCTGGCG
CAGCAGGAGG CGCCCACGCA TGCGCTGCTG GTGTTCTCCA TCGTGGGCGT GGTGGTGCTG
GTCTTCGGCC TGGTGCTCGC GGTCAACATG ACGCTGCGCT ACCGCCAGAT CTACCGGCAG
GTCCAGCGCA GCGAGTCGCG CCTGCGCGCC GTGGTGGATA CGGCGGTGGA CGGCATCGTG
ATGATCGACG GGCGCGGCAG CATCGTCTCG TTCAACGGCG CGGCCGAGCG GCTGCTGGGC
TGGACGGCGC AGGAGGTGCT GGGCCGCAGC GCCAGCCTGC TCATGCCCGC GTCGGGCTGC
GATGGTGAGG GCGGCTCGCT GGAAAAGCAG CTGGCCGCGG GCTTTGCAGG CCTGCTCGGC
TCCAGCCGAG ATGTCCATGC CCTGCACAAG GACGGCACGC AGATCGCCGT GCGCCTGGCC
GTGGGCCGGG TGGCGATTGC GGGCGATCCG CTGTTCGTGG GCTTTGTGAC CGACATCCGC
GAGCGCCGCC AGATGCTGCA GTCGCTGCGC CGCAGCGAGG AGCAGTACCG CACCCTGATC
AACAACGTGC CGGGCACCAC CTTCCGCTGC CTGTACGACG GCAAGTGGAC GCCGCTGCTG
CTCAGCCGCT CCATCAAGGA GCTGACCGGC TGGACGGAGC AGGACTTCAC GGATGGACTC
ACGGGCTGGG ACCGGCTCAT CCATGCCGAG GACCGCGACC GGCTGGAGGC TGCGGTCTCG
CATTCGCTGT CACGGCGCCA GACCTACAAC GCCGACTACC GCCTGCTGCA CCGCGACGGC
AGCACCCGCT GGGTGTCCGA GACCGGGCGC GGCGTCTTCA ACGAGCACGA CGAGCTGACC
TGGATCGACG GCGTGATCAT GGACCAGACG GCGGCGCGCG CGCGCAATGC CGAGTTCGAG
GGCACGGTGC GCGCCATCGA CCTGTCGCTG GCCACCATCG AGTACGACCT GCTGGGCCAA
GTGCTGCGCG CCAACCGCAA TTTCCTGGAC CTGTTCGGCT ACCGGCTCGA CGAGGTCGCG
GGCCGCCACC ACGGCATGTT CTGCGAGCCC GGCTATGCCC ACACGCCCGA GCATGAGCAG
TTCTGGCGCC GCCTGGCCGA GGGCGAGTTC CAGGCCGGCG AATTCCTGCG CTGCGGGCGC
GAGGGGCGGC GCATCTGGGT GCAGGCCACC TACAACCCCA TACGCGACGC CGACGGCCGG
CCCTACAAGA TCGTCAAGCT GCTCACCGAC ATCAGTGCCC AGCGCAAGCT GGCCCAGGAG
CTGGTGCTGG CCAAGGAGCA TGCCGAGGCG GCCGCCGCCG CGCGCAGCAC CTTCCTGGCC
AACATGAGCC ACGAAATCCG CACGCCCATG AACGCCATCA TCGGCTTCAC CGAGGCGCTG
CGCGAAACCG CCCTGCAGCC CACGCAGGCG CGCTACCTGG ACACGGTGCA CTACGCGGCG
CGCTCCATGC TGCGCCTGCT CAATGACATC CTGGACACGG CCAAGCTCGA CAAGGGCGCG
GTGGAGCTGG AGATCGAGGA TTTCTCGGTG CGCGAACTGT GCCAGCAGAT CCTGGCGTCG
CTGCGCATCA CGGCCGACCG CAAGGGCCTG GACCTGCGCC TGGACTACGA CCCGCACACA
CCGGCCGCGC TGCGCGGCGA CGGCATGCGC GTGCAGCAGA TCCTGGTGAA CCTGCTGGGC
AATGCCGTGA AGTTCACCGA GCGTGGCCAT GTGCTGCTGC GCGTGCGCTA CGAGCAGGGC
GTGCTGCAGC TCGATGTGCA TGACACGGGC ATCGGCATCG CGCCCGAGAA GATCCACCGC
ATCTTCGACC CCTTCGCCCA GGCCGACGCC TCGACCACGC GGCGCTTTGG CGGCACGGGC
CTGGGCACGA CCATCTCGCG CCAGCTGGCC GAGCTCATGG GCGGCAGCAT CCAGCTGCAC
AGCACCGTGG GCGTGGGCAC GGTGTTCGAG GTGCGCCTGC CCCTGCCCGT GGGCGAGAAC
CAGCTGCCCG AGCGTGGCGC GGTCAGCCGC GGCCTGCCGC CGCTGCACAT CCTGGCCGTG
GACGATGTGC CCGAGAACCT GGAGCTGCTG CAGATCAACT TCTCCAGCCA GAACCACCAG
ATGGCGCTGG CGCATGACGG CGCCGAGGCG CTGCGCCGCG TGCAGGCGCA GGAGCCGCCC
TTCGACGTGG TGCTGATGGA CCTGCAGATG CCGGGCATGG ACGGCCTGGC GGCGGCGCGT
GCCATCCGCG TCTGGGAGCG GCAACTGCAG CGCCGGCCCG TGCCCATCGT CGCGCTGTCG
GCCAGCGTGC TGGAGAAGGA CCGCAGCGAC GCCAGCGCCG CCGGCATGGA CGGCTTTGCC
TCCAAGCCGC TGGACATGGC GCGGCTGCAG GCCGAGATCG CGCGGCTGCT GTCGCTGCAG
GTGGCGCTCA AGGAGGCCAG GCCGCCCGCG CCCGCCAGTG CCCAGGCGGG GCTGCCCGAT
GTCACGGTGG ACTAG
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| Protein sequence | MNWDEIFVLG WAPHPQWFQW LHPGLVALSV VVAVATSMMA MQIAGLARNA ASPRIRRTGV
LTGAFCLGAG IWAMHFIGML AFVPCTFGDY DPWITALSML PSMLASWLAL TLMVRPRLSA
QALVGGGVLM GLGIGSMHYI GMAAAQTWSL MLYDPWGVLL SVIVAATMAM LSLWVRFRLG
NTGRLWPTLV AGIVMGLAIS CMHYAGLYAL RLKPGIDALA QQEAPTHALL VFSIVGVVVL
VFGLVLAVNM TLRYRQIYRQ VQRSESRLRA VVDTAVDGIV MIDGRGSIVS FNGAAERLLG
WTAQEVLGRS ASLLMPASGC DGEGGSLEKQ LAAGFAGLLG SSRDVHALHK DGTQIAVRLA
VGRVAIAGDP LFVGFVTDIR ERRQMLQSLR RSEEQYRTLI NNVPGTTFRC LYDGKWTPLL
LSRSIKELTG WTEQDFTDGL TGWDRLIHAE DRDRLEAAVS HSLSRRQTYN ADYRLLHRDG
STRWVSETGR GVFNEHDELT WIDGVIMDQT AARARNAEFE GTVRAIDLSL ATIEYDLLGQ
VLRANRNFLD LFGYRLDEVA GRHHGMFCEP GYAHTPEHEQ FWRRLAEGEF QAGEFLRCGR
EGRRIWVQAT YNPIRDADGR PYKIVKLLTD ISAQRKLAQE LVLAKEHAEA AAAARSTFLA
NMSHEIRTPM NAIIGFTEAL RETALQPTQA RYLDTVHYAA RSMLRLLNDI LDTAKLDKGA
VELEIEDFSV RELCQQILAS LRITADRKGL DLRLDYDPHT PAALRGDGMR VQQILVNLLG
NAVKFTERGH VLLRVRYEQG VLQLDVHDTG IGIAPEKIHR IFDPFAQADA STTRRFGGTG
LGTTISRQLA ELMGGSIQLH STVGVGTVFE VRLPLPVGEN QLPERGAVSR GLPPLHILAV
DDVPENLELL QINFSSQNHQ MALAHDGAEA LRRVQAQEPP FDVVLMDLQM PGMDGLAAAR
AIRVWERQLQ RRPVPIVALS ASVLEKDRSD ASAAGMDGFA SKPLDMARLQ AEIARLLSLQ
VALKEARPPA PASAQAGLPD VTVD
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