Gene Daci_6012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_6012 
Symbol 
ID5751643 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp6717585 
End bp6718526 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content73% 
IMG OID641301154 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001567025 
Protein GI160901443 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGACCT CCTCCGCCAC CGACGATCCT CTGGCGCTGT TCGAGCGCCA CCGCCCGCGC 
CTGTTCGGCC TGGCCTACCG CATGCTGGGC CAGCGCGCCG ATGCCGAAGA CCTGGTCCAG
GAAGCCTGGC TGCGCTGGCA TGGCGCCGAG CGCGCCGGCA TAGAGCAGCC CGAGGCCTGG
CTGGTCTCCG TGACCACGCG CCTGGCCATA GACCGGCTGC GCCGCCTGCG CGCCGAGCGC
GAGCACTACC AGGGATTCTG GCTGCCCGAG CCCCTGGTCC AGCCCTGGGC CGAGGAGGCC
GCGCCCTCGG CCGAAGACCT GCTGGAGCGT GCCCACGACG TGTCCACGGC CCTGATGTTC
GTGCTGGAGC AGCTCACCCC CGACGAACGT GCGGCCTTCC TGCTGCGCGA GATCTTCGAT
GCCGACTATG CCGAGGTGGC CCAGGCCCTG GGCCGCAGCG AGGCCGCCTG CCGCCAGCTC
GTGCACCGCG CCCGCAGCCA TGTACAGGCC GGCCGCCCGC GCTTTGCCGC GCCGCCCGAG
GCCCATGCCG CGCTGCTGCA GCGCTTCGCG CAGGCCGTGC AGGGCGGGAA CTTCGCGCAG
ATCCAGGCGC TGTTCGCGCC CGATGCCGAA CTCATCAGCG ACGGCGGCGG CAAGGTGCCC
TCGTTCGGCC GCGTGCTGGA GACGGGCCGG CGCCTGGCCC TGCTGTACTT CGCCACCACG
CGCCGCATGC GGCGCAACGG CCAGCAACAG AGCCTGCATC TGGCGCGCGT CAACGGCCTG
CCGGGCCTGC TGCGCTGCAT CGACGGCGAA CTGGAGTCCG TGCAGACGCT GCTGGTCGAG
GACGGCCTGA TCCGCTGCAT CTACACGCTG CGCAACCCCG ACAAGCTGGC CGGCGTGGCC
GTGCCGGCGC CACTGCCGTT CCCTGCAGGC CCTGCAGCGT AG
 
Protein sequence
MQTSSATDDP LALFERHRPR LFGLAYRMLG QRADAEDLVQ EAWLRWHGAE RAGIEQPEAW 
LVSVTTRLAI DRLRRLRAER EHYQGFWLPE PLVQPWAEEA APSAEDLLER AHDVSTALMF
VLEQLTPDER AAFLLREIFD ADYAEVAQAL GRSEAACRQL VHRARSHVQA GRPRFAAPPE
AHAALLQRFA QAVQGGNFAQ IQALFAPDAE LISDGGGKVP SFGRVLETGR RLALLYFATT
RRMRRNGQQQ SLHLARVNGL PGLLRCIDGE LESVQTLLVE DGLIRCIYTL RNPDKLAGVA
VPAPLPFPAG PAA