| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5960 |
|---|
| Symbol | |
|---|
| ID | 5751581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 6647928 |
|---|
| End bp | 6649781 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641301092 |
|---|
| Product | CBS domain-containing protein |
|---|
| Protein accession | YP_001566973 |
|---|
| Protein GI | 160901391 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGGC TGGAACAACG GCCCCGCCCC ATGCCCAACG CCTTCAACTT CGCCGCCTCT
CCCTTCGACT GCCTCACGCC CGACGAACAG GCGCTGGTGC GCGATGGCGT GGACATCGCC
TACTTCCCCG AGGGCGCCGT GGTGCTCGAC GCCGGCTCGG CGCCCACCCA CCTCTTCGTC
ATCATCAAGG GCCATGTGGT GCAGACCGAG GGCGACGAGG TGCTGGCCAG CTACGGCCCC
GACGACAGCT TCGACGGCCG CGCCCTGGTG GCCGGCCGCA CGGGCAGCCG CTTCACCGTG
GCCGAGGAAC TCATCGCCTA CCAGCTTGCG CGCGAAACCG TGGGCGAGCT GATCGCGCGC
AACACCGCCT TTGGCGCCCT GCTGTTCTCC GACCTGGGCC ACAAGCTGGG CACATTGGCC
CAGCGCGCCG ACCGGCACGA ATTGCAGTCG CTGACGCTGG CGCGCGTGGA CCAGGCCTAT
CTGCGTGCCG CCCATGTGGT GGATGCGGCC ACGGACATCG TCTCCGCGGT GCGCCTGTTC
CATGCCGAGC GCACGACCTG CGTGCTGGTC TCGGGACTGC CGCAGGGCGG CCTGGGCATC
TTCACGGGCA CCACGCTGCA GCGCGCCATC CTTGACGGCC GCCCGCTGGA GCGGCTGGCC
GTGGGCGAAT TCGCCAGCCA GCCCGTGTTC ACCGTGCGCG CCGACGACCA GCTGGGCGAT
GCCCTGGTCG TGCTGCTGCG CGCCCGCGTG CACCGGCTGG CCGTGCTGGA TGCACAGGGC
CAGGTGCTGG GCATTCTGGA GGCGCTGGAC CTGTTCAGCT TCCTGGCCAA CCACTCCCAC
CTCATCACCG TGCAGATCGA GCAGGCTGCC GACCTGCAGG CGCTGGAGCA GGCCGCCGCC
CAGATCACGC GCCTGGTGGC CGCCCTGCAC CGGGGCGGCA CGCGGGTGGC CCTGATGGCG
CGGCTGGTGC AGCAGCTCAA TGCGCGCCTG TTCGAGCGTG CCTGGCAGAT GCTGGCGCCG
CCGGACCTGG TGGCCCAAAG CTGCCTCTTC GTCATGGGCA GCGAGGGGCG CGGCGAGCAG
TTGCTCAAGA CCGACCAGGA CAACGGCCTG CTGCTGCGCG ACGGCTATGC GCCGCCCCAG
GACCTCGACG CCATCTGCGC GCGCTTTTCC GCGCAGCTGC AGCGCTTCGG CTACCCCGAA
TGCCCGGGCG GCATCATGCT CAGCAACCCG CAGTGGCGCG GCACGGTGGC CAGCTTCGGC
AGGCAGGTGC GCGAATGGCT GATCCTGCCC GGCCCCGAGG GCCTCATGCA CCTGGCGATC
TTCCTCGACG CCCATGCGGT GGCGGGCGAT GCCGCGCTGC TGGCCACGGT GCGGCGCGAC
CTGATGGCGC TGGCCCTGGA CAGCGATGCC CAGGTGGCGC GCTTCGCCTC GGCCGTCGAC
GCCTTCGCGC ACGAGCCGGG CAGCTGGTGG GAGCGGCTGC TGGGCCGCGG CGGCGAGGGC
GCGCCCGTGC ACCTGAAGAA GGCCGGCATC TTCCCCATCG TCCATGGCGT GCGCAGCCTG
GCGCTGTCCC AGCGCATCGC CGCCACCGGC ACGGCCGAGC GCATCGCGGC CCTGGTGGAC
AAGGGCGTGC TCGACGGCGC CCAGGGCCAG GAGCTGCTCC AGGGCCTGCA TTTCCTCATG
GGCCTGCGCC TGCAGGCGGG ACTGGCCGAG ATCGACCTGG GCCGCCCCGT CACCGGCCAT
GTGGACCCGG CGCGCCTGAG CAGCCTGGAG CGCGACCTGC TCAAGGACAC GCTGGCCGTG
GTGCGGCGCT TCCGCGAACT GCTGCGCCAG CGCCTGCGGC TGGACGCCGT ATGA
|
|---|
| Protein sequence | MAGLEQRPRP MPNAFNFAAS PFDCLTPDEQ ALVRDGVDIA YFPEGAVVLD AGSAPTHLFV
IIKGHVVQTE GDEVLASYGP DDSFDGRALV AGRTGSRFTV AEELIAYQLA RETVGELIAR
NTAFGALLFS DLGHKLGTLA QRADRHELQS LTLARVDQAY LRAAHVVDAA TDIVSAVRLF
HAERTTCVLV SGLPQGGLGI FTGTTLQRAI LDGRPLERLA VGEFASQPVF TVRADDQLGD
ALVVLLRARV HRLAVLDAQG QVLGILEALD LFSFLANHSH LITVQIEQAA DLQALEQAAA
QITRLVAALH RGGTRVALMA RLVQQLNARL FERAWQMLAP PDLVAQSCLF VMGSEGRGEQ
LLKTDQDNGL LLRDGYAPPQ DLDAICARFS AQLQRFGYPE CPGGIMLSNP QWRGTVASFG
RQVREWLILP GPEGLMHLAI FLDAHAVAGD AALLATVRRD LMALALDSDA QVARFASAVD
AFAHEPGSWW ERLLGRGGEG APVHLKKAGI FPIVHGVRSL ALSQRIAATG TAERIAALVD
KGVLDGAQGQ ELLQGLHFLM GLRLQAGLAE IDLGRPVTGH VDPARLSSLE RDLLKDTLAV
VRRFRELLRQ RLRLDAV
|
|---|
| |