Gene Daci_5959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5959 
Symbol 
ID5751580 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp6647278 
End bp6647916 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content72% 
IMG OID641301091 
ProductDNA polymerase III subunit epsilon 
Protein accessionYP_001566972 
Protein GI160901390 
COG category[L] Replication, recombination and repair 
COG ID[COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCAGCGCT GGGTGGCGGG CCTGCGGCGC AACTGGCAGC GGCGCAGGCT GGCGGACCCC 
GCCTATGCCT TTCTCTTCGA TGCGCCGCCG CCCGGCGAAT GGGTGGCGCT GGACTGCGAG
ACCACGGGCC TGGATGTGCG CTGCGACCAG ATCATCTCCA TCGGCGCCGT GCGCATCGTG
GGCGAGCGCA TCCTGTCCAG CGAACGCCTG GAACTGCTGG TGCGCCCCTC GCGCAGCGTG
CCCGGCGACA GCGTGCGCAT CCACCGCCTG CGCGAGCGGG ACCTGGCCCG GGGCCTGGCC
ATCGAGGACG CGCTGGCGCA GCTGCTGCGC TTCATCGGCA GCCGCCCGCT GGTCGGCTAC
TACCTGGAAT TCGACGTGGC CATGATCGAG CGCGTGCTGC GCCCCTGGCT GGGCACGGGG
CTGCCCAACG AGCGCATCGA GGTCTCGGCC CTGTACTACG ACCACCGCTT CCGGCAGCTG
CTGCCCTGGC AGCAGCAGGC GCCCGAGATC GACCTGCGCT TTGCCACGCT GATGGCCAAC
CTGGGCCTGC CGCAGCGCGA GGCCCACGAC GCGCTCAACG ACGCCGTGAT GGCGGCGCTG
GCCTTCATCA AGCTGCGCAG GCTGGCCGGC GCGACGTAG
 
Protein sequence
MQRWVAGLRR NWQRRRLADP AYAFLFDAPP PGEWVALDCE TTGLDVRCDQ IISIGAVRIV 
GERILSSERL ELLVRPSRSV PGDSVRIHRL RERDLARGLA IEDALAQLLR FIGSRPLVGY
YLEFDVAMIE RVLRPWLGTG LPNERIEVSA LYYDHRFRQL LPWQQQAPEI DLRFATLMAN
LGLPQREAHD ALNDAVMAAL AFIKLRRLAG AT