Gene Daci_5943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5943 
Symbol 
ID5751564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp6624141 
End bp6625127 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content67% 
IMG OID641301075 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_001566956 
Protein GI160901374 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAATGA TCCGCCGCAC CCTTCTTTCG ACCTGCGTGG CCGCCATGGC GGCTGCTTCG 
GCTGGCGCCG TACTGGGCCA GACCAAGGAG GTCAAGGTGG GCTACGCCCT GGCCGTGAAT
TCGCACTACG GCGCGGCTGC CCAGGCCTGG GCCGATGCGG TGGAAAAGGG CACGAACGGC
GCCTACAAGT TCAAGCAGTT CCCCGCGTCC GCCCTGGGCG GCGAACGCGA GCTGATCGAG
GGCCTGCAGC TGGGCACGGT GGAGGCGGCC ATCGTCTCCA CGGGCGCCAT CAGCAACTTC
GTGCCCGATG TGGGCGTGGT GGACATTCCC TTCCTGTTCC GCGACACGCA GCATGCGCGC
GCCGTGCTGG ACGGCGCCTT CGGCCAGGAG CTGCTGGCCA AGTTCAGCAA GCGCGGCCTG
GTCGCGCTGG CCTGGGGCGA GCAGGGCTTT CGCCACCTGT CCAACAACAA GCACGCCGTC
AACGGCGTGG CCGATCTCAA GGGCCTGAAG ATCCGCGTGA CCGAGAACCC CGTGCACATC
ACGGCCTTCC GCACGCTGGG CGCATCGCCC ACGCCCATGT CCTGGCCCGA GGTGATCGGT
GCGCTGCAGC AGGGCACGAT CGACGGCCAG GAGAACCCGA TCTCGGTGCT GGCCTCGGCC
AAGCTGTGGC AGGTGCAAAA GCACCTGACG CTGACGGCCC ATGTGTACGC GCCCATGGCC
CTGCTGGTGT CGCCCTCGTT CTGGGGCAGC TTGAACGACA GCCAGAAGGC GGCCTTCACG
CAGGGCGCCA AGTCGGGCGC CATCGCTTCG CGCGTGTTCG TGGACACGGT GGAGAAGAAG
GGCGTGGAAG AGGCCAAGAG CCACGGCATG CAGGTGGTGG AGAAGGTGGA CCAGGCTGCC
TTCCGCACCG CGCTGGAGCC AGCCTACAAG GAATACGCGA AGAAGTTCGG CCAGAAGACG
CTGGACACCA TCGCCAACGC CAAGTAA
 
Protein sequence
MQMIRRTLLS TCVAAMAAAS AGAVLGQTKE VKVGYALAVN SHYGAAAQAW ADAVEKGTNG 
AYKFKQFPAS ALGGERELIE GLQLGTVEAA IVSTGAISNF VPDVGVVDIP FLFRDTQHAR
AVLDGAFGQE LLAKFSKRGL VALAWGEQGF RHLSNNKHAV NGVADLKGLK IRVTENPVHI
TAFRTLGASP TPMSWPEVIG ALQQGTIDGQ ENPISVLASA KLWQVQKHLT LTAHVYAPMA
LLVSPSFWGS LNDSQKAAFT QGAKSGAIAS RVFVDTVEKK GVEEAKSHGM QVVEKVDQAA
FRTALEPAYK EYAKKFGQKT LDTIANAK