| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5938 |
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| Symbol | |
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| ID | 5751559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 6613099 |
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| End bp | 6615990 |
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| Gene Length | 2892 bp |
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| Protein Length | 963 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641301070 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_001566951 |
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| Protein GI | 160901369 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAA AAGCCGACAG GGTACGGAAG CCAGGCTGTT TCCCGTTCAA GGCCAAACCA
CTACATGCCT TGCTGCTGGC AGTACTGGCC TGTTGGCAAA TGGATATGCG CGCCTCGCAA
ACAGAGCACA CCGCCGGCAG GATGCCGCCC GCACGCGCAC AGCACATCGA ATTCAACAGC
AGCTTTCTGC GAGGAGGCGA CGGGATCGAT GTCTTGCGTT TTGCAGAGGG TAATTCTGTG
GAACCGGGTC TCTACAACCC GGACCTTCTG GTCAACGGCA ACTGGATGGC CCGCACCGAG
GTGCGGTTCA CTCAACGCAG TCGGGGTGCC AGTGCCCAGC CCTGCTTCAA CATGTCCCTG
CTGGAGCAAA TGGACATTGA CATGGCGAGC CTGCCGGCGA ACGAGGATGT TGTGGATGGA
GACCCAGCGT GCCTGCGCAT TGAAAAGGTC GTCCCCGGCG CTTCCGCAAG CTTCAACGTA
GGTTTGCAAC GACTGGATGT GAGCATTCCC CAGATCCTGA TGCGGCGCGT GGCAAGCGGC
TACGTGAGTC CGGAGCAGTG GAACGCGGGC GTGACGACCG GCACGCTCGG CTATGACTTC
AACACCTACC ATGCGCGCGG CGGGCCAGCG GGCAGCAGCA CCCAGGGCTA CCTGGGCCTG
AACAGCGGCT TCAACTATGC GCGCTGGCAT TTCCGGCACA GTGGCTCGTT CAGTTGGAGC
GATCAGGGAC CGAGCCGTTA TCAGAGCATC TCGGCCTATG CGCAGCGCGA CATCGCCGAC
TGGTCATCGC AACTGATCCT GGGCGACACC TACACCGACG GGGAGATCAT GGACTCGGTC
TCCTTCCGCG GCCTGCGGCT GCGCACGGAC GACCGCATGC TGCCCGAGTC GCAGCGCGGC
TTCGCGCCCG TGGTGCGCGG CGTGGCCAAT TCCAACGCCC GGGTGGTCAT CCGCCAGAAC
GGCATCAAGC TGCAAGAGAC CACGGTGGCA CCGGGCGCCT TCGTGATCGA TGACCTGTAC
CCCACCGGCT ATGGCGGCGA CCTGCAGGTG GACATCGAGG AGGCCGACGG CTCCGTGCGT
TCCTTCTCGG TGCCCTATGC GGCCGTTCCT CGTTCGTTGC GCGAGGGCCA GCACCGCTAC
AGCCTCACAG CGGGCGCGGT GCGCGGCCTG CGTGAGAGCG CTCCGTTCTT CTCGCAGGCA
GGCTGGCAGT ACGGCTTCTC GAACATGCTC ACGGCCTATG GCGGCGCCAC GGTCGCCAAG
GGCTATTTCT CGCCCACGGT GGGCGCCGTG TTCAATACAC CATGGGGTGC CTTTGGCCTG
GACCTCACAC ACGCCAGCAC CCGCATCCCC CATGACCGCA GCTACTCGGG GCAAAGCCTG
AGAGTCACCT ACGCCAAGAC CTTCCCGGAG TCCGGCACGG GCATCACCCT GGCTGCCTAC
CGCTATTCCA CCAACGGGTT CTTCGGCATC AACGAGGCCA TGCGGGCGCG CGACCTGACC
CGGCCCGCTG CCAGCGGCGC ACCGCCCCCG CTGTCGCGCC CGCGCACGCG CGCCGCAATG
ACACTGAGCC AGCGCCTGGG CGAGCAAGGG GGCAACCTGA GCATTTCCGC CTCCATGGAC
AACTACTGGA ACCGCGCGGG CCGCCGCGTG GACTACACGC TCAACTACAG CAGCTCGTGG
CTGGGCGTTC CCTACAACTT GTCGGCCTCG CGCCAGCGCG ATGCCTGGGG CCGCCCCAGC
ACGCAGCTGT ACGCAGGGGT GACGATTCCG CTGGGGGCGG GAAAGCCCAG AGTCATGAGC
CGTTTCACAC ATGACTCGCG CGGCGGCAAC CAGTTGCAGG CCAGCACCTA CGGGCAGGCC
GGCAGCGATC TCTCCTATGG CCTGAATGCC GAATACGGCA GCAGCGGCAA CCAGGGATCG
CGCCTCAATG CAGGCGCCAA TGCCCTCTAC CGCCGCCCGT ACACGCTGTT CAGCGGCAGC
GTGAGCGCGG GCCGGGCCGG CCAGCAACTG TCACTGGGCG CGCGCGGCGC CTTGGTCGCC
CACCCCGGAG GGGTCACGCT GTCGCAGCCC CTGGGCGAGA CCTTCGCCAT CGTGCAGGCC
CCGCATGCCG AGGGCGCGCG CCTCACCAAT GCGCCCGGTG TACGCATCGA TGCACGGGGC
TATGCCGTGG TGCCCTACAT GACACCCTAT GCCATGAACG AGGTGTCGCT GGACCCCAAG
GGCATGTCCA TGGATGTGGA ACTGCAGGAG GCCAACCGGC GCGTCGCACC GGTGGCCGGT
GCCGCCGCCA TGGTGGTGTT CAAGACGAGC TACAGCCGCT CAGCCGTGCT GCGCCTGACG
CAGGCGGACA CGTCGCCCGT GCCTTTCGGC GCCGTCGTCT CGGACGAGAG CGGCAAGGAC
CTGGGCATGG TCGGCCAAGC CGGCAAGCTC ATGCTGCGCG GCCTGTCGGA CCAGGGGCAG
CTGCACGCCC AGTGGAAGGC CGGCGATGGC ACGGCCCATT GCAGCATGGC CTATTCGCTG
CCGGCGCGGG AGCGCTCCAC CGGCTCCCGT GTGCCAGCCA GCATGGACCT GCACTGCGTG
CCGTCCCATC TTGCCGCAGC GCCGTCCCAT CAGGCCGCGC TGACACACAG AGCCGAGACC
TCGCGCCCCA TCGCCATCCG CCAGTCCAGC CTGCCCTTCC AGGCCGAGAA GCATCTTGGC
GATTTGCGGC TGAGCCTGCG CATCAGTGTC TTGCGCACCA CGGCCGATGC GAAGCAGTAC
ACGGGCCAGG CGCAACCGCC CTTGGCGCCG GACGGCCAGG CAGACAACAG CCCTGGCCTG
CGGATCGATC GCAGCCTGGT GGGTAAATTG CGGGACTCGC CAACGCACGC CCAGGCCTCG
GTCGGCGTCT GA
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| Protein sequence | MKKKADRVRK PGCFPFKAKP LHALLLAVLA CWQMDMRASQ TEHTAGRMPP ARAQHIEFNS
SFLRGGDGID VLRFAEGNSV EPGLYNPDLL VNGNWMARTE VRFTQRSRGA SAQPCFNMSL
LEQMDIDMAS LPANEDVVDG DPACLRIEKV VPGASASFNV GLQRLDVSIP QILMRRVASG
YVSPEQWNAG VTTGTLGYDF NTYHARGGPA GSSTQGYLGL NSGFNYARWH FRHSGSFSWS
DQGPSRYQSI SAYAQRDIAD WSSQLILGDT YTDGEIMDSV SFRGLRLRTD DRMLPESQRG
FAPVVRGVAN SNARVVIRQN GIKLQETTVA PGAFVIDDLY PTGYGGDLQV DIEEADGSVR
SFSVPYAAVP RSLREGQHRY SLTAGAVRGL RESAPFFSQA GWQYGFSNML TAYGGATVAK
GYFSPTVGAV FNTPWGAFGL DLTHASTRIP HDRSYSGQSL RVTYAKTFPE SGTGITLAAY
RYSTNGFFGI NEAMRARDLT RPAASGAPPP LSRPRTRAAM TLSQRLGEQG GNLSISASMD
NYWNRAGRRV DYTLNYSSSW LGVPYNLSAS RQRDAWGRPS TQLYAGVTIP LGAGKPRVMS
RFTHDSRGGN QLQASTYGQA GSDLSYGLNA EYGSSGNQGS RLNAGANALY RRPYTLFSGS
VSAGRAGQQL SLGARGALVA HPGGVTLSQP LGETFAIVQA PHAEGARLTN APGVRIDARG
YAVVPYMTPY AMNEVSLDPK GMSMDVELQE ANRRVAPVAG AAAMVVFKTS YSRSAVLRLT
QADTSPVPFG AVVSDESGKD LGMVGQAGKL MLRGLSDQGQ LHAQWKAGDG TAHCSMAYSL
PARERSTGSR VPASMDLHCV PSHLAAAPSH QAALTHRAET SRPIAIRQSS LPFQAEKHLG
DLRLSLRISV LRTTADAKQY TGQAQPPLAP DGQADNSPGL RIDRSLVGKL RDSPTHAQAS
VGV
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