| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5861 |
|---|
| Symbol | |
|---|
| ID | 5751482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 6518079 |
|---|
| End bp | 6520706 |
|---|
| Gene Length | 2628 bp |
|---|
| Protein Length | 875 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641300993 |
|---|
| Product | aconitate hydratase |
|---|
| Protein accession | YP_001566874 |
|---|
| Protein GI | 160901292 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1048] Aconitase A |
|---|
| TIGRFAM ID | [TIGR01341] aconitate hydratase 1
[TIGR02333] 2-methylisocitrate dehydratase, Fe/S-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.370174 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACA CCCACAAGAA ACCCCTGCCC GGCACCACGC TGCACTACAT CGACGCCCGC
GCCGCCGTCG ATGCCCTCTC GCCCGGCGCC TGGGCACGCA TGCCCTACAC CGCCCGCGTC
CACGCCGAGA ACCTTGTGCG CCGCGCCGAT CCCGCGCAGC TGGACAGCTA CCTGCTGCAG
CTCATCGAGC GCCGCCGCGA CATCGACTTT CCCTGGTACC CCGTGCGCGT GGTCTGCCAC
GACATCCTGG GCCAGACCGC CCTGGTGGAC CTGGCCGGCC TGCGCGACGC CATTGCGGCC
GAAGGCGGCG ACCCCGCCCA GGTCAACCCC GTCGTTCCCG TGCAGCTCAT CGTGGACCAT
TCGCTGGCCG TGGAGTGCGG CGGCTTCGAT CCCGACGCCT TCGTGAAGAA CCGCGCCATC
GAGGACCGCC GCAACGAGGA CCGCTTCCAC TTCATCGAGT GGACAAAAAA AGCCTTTGCC
AACGTGGATG TGATCCCCGC AGGGAACGGG ATCATGCACC AGATCAATCT GGAAAAAATG
TCCCCCGTGG TGACCGTGCA GGATGGCCTG GCCTTCCCCG ATACCTGCGT GGGCACGGAC
AGTCACACGC CCCATGTCGA TGCCCTGGGC GTGATCGCCG TGGGCGTGGG TGGCCTTGAG
GCCGAGAACG TCATGCTGGG CCGCGCCTGC TGGATGCGCC TGCCCGAGAT CGTGGGCGTG
CGCCTCACGG GCCGGCGCCA GGGCGGCATC ACCGCCACCG ACATCGTGCT GGCCCTGACC
GAATTCCTGC GCCAGCAAAA AGTCGTCGGC GCCTATGTGG AATTCTTTGG CGAGGGCGCC
GACAGCCTGA GCATCGGTGA CCGCGCCACC ATCTCCAACA TGTGCCCCGA ATACGGCGCC
ACGGCGGCCA TGTTCTCCAT TGACGACCAG ACGCTGGCCT ACCTGCGCCT GACCGGCCGC
GACGAGGCCC AGGTGCGCCT GGTCGAAGCC TATGCGCGCA CTGCAGGTTT CTGGAGCGAC
AGCCTGGCCG ATGCCCAGTA CGAGCGCGTG CTGCAGTTCG ACCTGTCCAC CGTGGTGCGC
AACATGGCCG GCCCCTCGAA TCCGCACCGG CGCCTGCCCA CCTCGGCCCT GGCCGAGCGC
GGCATTGCCG ATGCGGCAAA ACTGCAGGCC GCCCGCGCCC AGGAGGCGCA AGGCCTGATG
CCCGATGGGG CCGTCATCAT CGCCGCCATC ACCAGCTGCA CCAACACCAG CAACCCGCGC
AACGTCATCG CCGCGGCCTT GCTGGCGCGC AACGCCAACC GTCTTGGATT GGTGCGCAAG
CCCTGGGTCA AATCCTCGCT GGCGCCGGGC TCCAAGGCCG TGGAGCTGTA TCTGAAGGAG
GCCGGGCTGC TCACCGAGCT GGAGCAGCTG GGCTTTGGCA TCGTCGCCTT TGCCTGCACC
ACCTGCAACG GCATGAGCGG CGCGCTGGAC CCCAGGATCC AGCAGGAAAT CATCGAGCGC
GACCTCTACG CCACGGCCGT GCTCTCGGGC AACCGCAACT TCGACGGGCG CATCCATCCC
CAGGCCAAAC AAGCCTTCCT GGCCTCGCCG CCGCTGGTCG TGGCCTATGC GCTGGCGGGC
ACCATCCACT TCGACATCGA GCAGGACGTG CTGGCCGTGG TGGACGGCCG CGAGATCCGC
CTCAAGGACC TGTGGCCCGC CGACGAGGAG ATCGACGCCA TCGTCGAGCA AGCGGTCAAA
CCTGCGCAAT TCCGCGCCGT CTACGAACCC ATGTTCGCCA TCCGCAAGGA CGACGGAAAC
AAGGCCTCGC CCCAGTACGA CTGGCGCCCC CAGTCCACCT ACATCCGCCG CCCGCCGTAC
TGGGACACCG AAGGCGTGGG CGCGCTGGCG GCCTTCCCGC GCACCCTCAC CGGCATGCGG
CCGCTGGCCC TGCTGCCCGA CAACATCACC ACCGACCACC TGTCGCCCTC CAACGCCATC
CTGGCCGACA GCGCCGCGGG CGAATACCTG GCGCGCATGG GCCTGCCCGA GGAGGACTTC
AACTCCTACG CCACCCACCG CGGCGACCAC CTCACCGCCA TGCGGGCCAC CTTTGCCAAC
CCGCAGCTGG TCAATGAAAT GGCCGTCATC GACGGCGTGC AGCACAAGGG CTCGCTGGCG
CGCATCGAGC CCGAAGGGCG CGTGGTGCGC ATGTGGGAGG CCATGGAAAC CTACCTGAAC
CGCCGCCAGC CGCTGATCAT CATCGCGGGC GCCGACTACG GCCAGGGCTC CAGCCGCGAC
TGGGCCGCCA AGGGCGTGCG CCTGGCGGGC GTGGAGGCGG TGGTGGCCGA AGGCTTCGAG
CGCATCCACC GCACCAACCT CATCGGCATG GGCGTGCTGC CGCTGCAGTT CGTGCCGGGC
ACCAACCGCA AGACCCTGGC CCTGGACGGC ACGGAGGTCT ATGGCGTGGA AGGCGAGCGC
ACGCCGGGAA CCCAACTCAC TCTGGTGATT GAACGAAGAG GTGGCCAGAC GCTGCGCGTG
CCCGTGACCT GCCGGCTGGA CACGGCCGAG GAGGTATCGG CCTACGAGGC AGGCGGCGTG
CTGCAGCGCT TTGCGCAGGA CTTCCTGGCG CAGGCTCAGG CCGCCTGA
|
|---|
| Protein sequence | MNHTHKKPLP GTTLHYIDAR AAVDALSPGA WARMPYTARV HAENLVRRAD PAQLDSYLLQ
LIERRRDIDF PWYPVRVVCH DILGQTALVD LAGLRDAIAA EGGDPAQVNP VVPVQLIVDH
SLAVECGGFD PDAFVKNRAI EDRRNEDRFH FIEWTKKAFA NVDVIPAGNG IMHQINLEKM
SPVVTVQDGL AFPDTCVGTD SHTPHVDALG VIAVGVGGLE AENVMLGRAC WMRLPEIVGV
RLTGRRQGGI TATDIVLALT EFLRQQKVVG AYVEFFGEGA DSLSIGDRAT ISNMCPEYGA
TAAMFSIDDQ TLAYLRLTGR DEAQVRLVEA YARTAGFWSD SLADAQYERV LQFDLSTVVR
NMAGPSNPHR RLPTSALAER GIADAAKLQA ARAQEAQGLM PDGAVIIAAI TSCTNTSNPR
NVIAAALLAR NANRLGLVRK PWVKSSLAPG SKAVELYLKE AGLLTELEQL GFGIVAFACT
TCNGMSGALD PRIQQEIIER DLYATAVLSG NRNFDGRIHP QAKQAFLASP PLVVAYALAG
TIHFDIEQDV LAVVDGREIR LKDLWPADEE IDAIVEQAVK PAQFRAVYEP MFAIRKDDGN
KASPQYDWRP QSTYIRRPPY WDTEGVGALA AFPRTLTGMR PLALLPDNIT TDHLSPSNAI
LADSAAGEYL ARMGLPEEDF NSYATHRGDH LTAMRATFAN PQLVNEMAVI DGVQHKGSLA
RIEPEGRVVR MWEAMETYLN RRQPLIIIAG ADYGQGSSRD WAAKGVRLAG VEAVVAEGFE
RIHRTNLIGM GVLPLQFVPG TNRKTLALDG TEVYGVEGER TPGTQLTLVI ERRGGQTLRV
PVTCRLDTAE EVSAYEAGGV LQRFAQDFLA QAQAA
|
|---|
| |