Gene Daci_5818 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5818 
Symbol 
ID5751439 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp6473511 
End bp6475388 
Gene Length1878 bp 
Protein Length625 aa 
Translation table11 
GC content71% 
IMG OID641300950 
ProductX-Pro dipeptidyl-peptidase domain-containing protein 
Protein accessionYP_001566831 
Protein GI160901249 
COG category[R] General function prediction only 
COG ID[COG2936] Predicted acyl esterases 
TIGRFAM ID[TIGR00976] putative hydrolase, CocE/NonD family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.412169 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAACA CATCAATCAC CGAGCTGGGC GGCGTGGTCC GCCACAGCCT CACCGTGCCC 
ATGCGCGATG GCGTGCGCCT GGCCACCGAC CTGTATCTGC CCGAGAACCT CGGCCCCCAC
GAACCCGGCC CGCTGCCCGT GCTGCTGGAG CGCACGCCCT ACGGCAAGAA CGAGGAAACG
CGCCGCGAGC GCAGCGCGGC CAACCCCCTT CCCATGCGCC GGGGCGAGGT GGCGGCCCGC
TTTGCGCGCG AAGGCTATGC CGTGGTCGTG CAGGACTGCC GGGGCCGCTT CGGCTCCGAA
GGCCAGTTCA CCAAATACCT GGGCGAGGCC CACGATGGCG CCGACACCCT GCAATGGATC
ATGGAGCAGC CCTGGTGCAA CGGCAGCGTG GGCACCTACG GCCTGTCCTA CGCCGCACAC
ACGCAGACTG CGCTGGCCAC GCAAAGGCCG CCGGGCCTCA AGGCCATGTT CCTGGAATGC
GGCGGCTTTG CGAATGCCTA CCGGGGCGGC ATACGCCATG GCGGTGCCTT CGAGCTGAAG
CAGGCCGTCT GGGCCCTGCG CAATGCGCGC AGCGGCAGCA ACCACCTGGA GCCCGCAGCG
CGCCAGGCGC TGGAGCAGGC CGACATCGGC CGGTGGTGCC TGCGCCTGCC CTGGTCGCGC
GGCGACTCGC CGCTGCAGTG GGCGCCCGAG TACGAGGACT ACCTGTTCAG CCAGTGGGAG
CGCGGCAGCT TTGACGACTA CTGGCGCCAG CCCGAGCTGT ACGCCGCCGG CCACTACGGC
GCCTTCGACG GCCTGGCCGT GATGCTGATG TGCGGCTGGT GGGACCCGTA TGCGCAGACC
ACCACGGACA ACTACCTGGG CCTGTCGCGC GGCGATGGCC GGGTCCGCAT GGTGCTGGGC
CCCTGGACCC ATGGCGAGCG CAGCGTCCCG CATGCGGGCG ATGTGGATTT CGGGCCCGAT
GCCGTGCTCG ACGGCGCACT GGCCGAAGAC TACGTGGCCA TGCGCCTGGC CTGGTTCGAC
CACTGGCTCA AGGGCCGGCC CATGCCCGCG CGCCAGCAAG CCGCCGTGCG CTACTTCCGC
ATGGGCGGCG GATCGGGCGC GCGCACGGCC CAGGGCCGGC TGGACCACGG CGGGGCCTGG
CGCAGCGCCG ACCACTGGCC CGTGCCCGGC ACGCAGCCCA CGGCCTGGCA CCTGCACGCC
GACGGCAGGC TGGCCCGCGA GCCCGCGCCG CAGCCGGGCG TGCGCAGCTA CCGCTTCGAC
CCGGCCTGCC CCGTGCCCAC CCTGGGCGGC TCCATCACCT CGGGCGAGCC GCTGATGTTC
GCAGGCGCCT ACGACCAGGT CACGCACGAG AGCACCTTCG CCGCCCGCCC GCCCTACGGC
CCGCTGTCCG AGCGTGGCGA CGTGCTGGTG TTCCAGACCG AGCCGCTGCA GCAAGACCTG
GAGGTCACGG GCACCATCAC CATCGAGCTG CAGGTGTCCT CGTCCGCGCC CGACACGGAC
TTCACCGCCA AGCTCATCGA CCAGTACCCG CCCAGCGCCG ACCATCCGCA GGGCTATGCG
ATGAACATCA CCGACGGCAT CCTGCGCTGC CGCTACCGCA ACTCATGGGA GCAGCCCGAG
CTGATGACGC CCGGCGAGGT GGTGGCCATC ACCATCGAGC CCATGCCCAC CTCCAACCTG
TTCCGCAAGG GCCACCGCAT CCGCCTGGAC ATCTCCAGCA GCAACTTCCC GCGCTTCGAC
GTGAACCCCA ACACCGGCGC GCCCGAGGGC AGTGCAGGAC CCATGCAGGT GGCGGTCAAC
AGCCTGCACC TGGGCGGGGC GCATGTGTCG CGCGTGGTGT TGCCGGTGGT GGGAAGGCTG
GTGGACAGGG CCGTCTGA
 
Protein sequence
MSNTSITELG GVVRHSLTVP MRDGVRLATD LYLPENLGPH EPGPLPVLLE RTPYGKNEET 
RRERSAANPL PMRRGEVAAR FAREGYAVVV QDCRGRFGSE GQFTKYLGEA HDGADTLQWI
MEQPWCNGSV GTYGLSYAAH TQTALATQRP PGLKAMFLEC GGFANAYRGG IRHGGAFELK
QAVWALRNAR SGSNHLEPAA RQALEQADIG RWCLRLPWSR GDSPLQWAPE YEDYLFSQWE
RGSFDDYWRQ PELYAAGHYG AFDGLAVMLM CGWWDPYAQT TTDNYLGLSR GDGRVRMVLG
PWTHGERSVP HAGDVDFGPD AVLDGALAED YVAMRLAWFD HWLKGRPMPA RQQAAVRYFR
MGGGSGARTA QGRLDHGGAW RSADHWPVPG TQPTAWHLHA DGRLAREPAP QPGVRSYRFD
PACPVPTLGG SITSGEPLMF AGAYDQVTHE STFAARPPYG PLSERGDVLV FQTEPLQQDL
EVTGTITIEL QVSSSAPDTD FTAKLIDQYP PSADHPQGYA MNITDGILRC RYRNSWEQPE
LMTPGEVVAI TIEPMPTSNL FRKGHRIRLD ISSSNFPRFD VNPNTGAPEG SAGPMQVAVN
SLHLGGAHVS RVVLPVVGRL VDRAV