Gene Daci_5727 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5727 
Symbol 
ID5751347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp6374789 
End bp6376384 
Gene Length1596 bp 
Protein Length531 aa 
Translation table11 
GC content74% 
IMG OID641300859 
Productallophanate hydrolase subunit 2 
Protein accessionYP_001566740 
Protein GI160901158 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1984] Allophanate hydrolase subunit 2
[COG2049] Allophanate hydrolase subunit 1 
TIGRFAM ID[TIGR00370] conserved hypothetical protein TIGR00370
[TIGR00724] biotin-dependent carboxylase uncharacterized domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.506367 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.818149 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTTTTC TACCCGTCAA CCGGCAGGCC CTGATGGTGG AGCTGGCCGA TCTGGATGAA 
ACCCTGGCCC TGCTGGGCTC GCTGCAGCGC GAGCCCATCG ATGGCGTGCA GGAGCTGGTG
CCGGCCGCGC GCACCGTGCT CGTGCAGTTC GCTCCCGCCA GGCTGGGCGT GGCCGAGCTG
GTGCGCCGCA TTGCCGCGCG CGACCTGGGC CAGCGGGCCG AGCGCAGCAA TGTGCTGGTC
GAGATTCCCG TGCACTACGA CGGCGAGGAC CTGGCCGATG TGGCGCAGCT GCTGGGCATC
ACGCCCGAGG AAGTCGTGCG CCGCCACACG GGCAGCGAGT ACGCCGTGGC CTTCACGGGC
TTCGCGCCCG GCTTTGCCTA CCTCAGCGGG GGCGATCCGA TCTTCAACGT GCCGCGCCGC
ACCACGCCGC GCACGCGCGT GCCGGCCGGC TCCGTGGCGC TGGGCGGCAC GTTCAGCGCC
GTCTATCCCC AGGCCAGCCC GGGCGGCTGG CAACTGATAG GCCGCACCTC GGCCCGCATG
TGGGACCTGG CGCGCGAGCT GCCTGCGCTG CTGCAGCCCG GCTACCGCGT GCGCTTTGCC
GATGCGGCCG GCATGGCCCA GGTGGATGAG GCGCCCGCGC CCGCCGTGGC ACAGGCCGCG
CCGCATGAAG GCAACGCGCT GCGCGTCAAG GCCACGGGCC TGATGACGCT GTTCCAGGAC
CGGGGCCGCC TGGGCCAGGC CGGGCAGGGC GTCTCGGCCT CGGGCGCCAT GGACCAGGCA
GCCTTCAAGG CCGCCAACCG CCTGGTCGGC AATGCCAGCG ACCTGGCCGT GCTGGAGACC
GTGGGCGGTG GCCTGTCGCT GCAAAGCCAG GGCGAGACCG TGGTCGCCAT CACGGGCGCC
GATGCGCCCC TGACCGTGAC CACCGGATCC GGCCAGCGCT GGAGCGTGCC GCGCTACCAG
GCCGTGGCCC TGGCCGATGG CGACCAGCTG ACCGTGGGCC AGCCCGTGGC CGGCGCGCGC
TGCTATGTGG CCGTGCGCGG CGGCTTCGCC GTCACGCCCG TGCTGGGCAG CGCCTGCACC
GACACCCTGG CGAATGTCGG CCCAGCCGCC CTGGCCGTGG GCCAGGTCCT GCCCGTTCGG
CCTGCGGACC GCAAGGCCGT GGCCGCACCC GAGCTGCCGC CCGAATCCCT GCCCACCACC
GGGCAGGACG TGGTGCTGGA CGTGGAGCTG GGCCCGCGCA CCGACTGGTT CACGCCCGAG
GCCGTGGCCC TGCTGGCCGC GCAGCGCTGG CAGGTCACGC CGCAGTCCAA CCGCGTGGGC
CTGCGCGTGG CCGGCGAGCA GCCCCTGGCG CGCGCCGTGG CCGGCGAGCT GCCCAGCGAA
GGCACGCCGC TGGGCGCCAT CCAGGTGCCC CCCAGCGGCC AGCCCGTGCT GTTCCTGGCC
GACCATCCGC TGACGGGCGG CTATCCCGTC ATCGGCTGCG TGGCGCCGCA CCACCTGGAT
CTGGCCGGCC AGATTCCCGT GGGCGCCTGG ATCCGCTTCA ACCCCATCCG CGCCTTCGAG
GAATACACCC CCGGCGCGCA AGGCTCCAAG AACTGA
 
Protein sequence
MRFLPVNRQA LMVELADLDE TLALLGSLQR EPIDGVQELV PAARTVLVQF APARLGVAEL 
VRRIAARDLG QRAERSNVLV EIPVHYDGED LADVAQLLGI TPEEVVRRHT GSEYAVAFTG
FAPGFAYLSG GDPIFNVPRR TTPRTRVPAG SVALGGTFSA VYPQASPGGW QLIGRTSARM
WDLARELPAL LQPGYRVRFA DAAGMAQVDE APAPAVAQAA PHEGNALRVK ATGLMTLFQD
RGRLGQAGQG VSASGAMDQA AFKAANRLVG NASDLAVLET VGGGLSLQSQ GETVVAITGA
DAPLTVTTGS GQRWSVPRYQ AVALADGDQL TVGQPVAGAR CYVAVRGGFA VTPVLGSACT
DTLANVGPAA LAVGQVLPVR PADRKAVAAP ELPPESLPTT GQDVVLDVEL GPRTDWFTPE
AVALLAAQRW QVTPQSNRVG LRVAGEQPLA RAVAGELPSE GTPLGAIQVP PSGQPVLFLA
DHPLTGGYPV IGCVAPHHLD LAGQIPVGAW IRFNPIRAFE EYTPGAQGSK N