| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5697 |
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| Symbol | |
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| ID | 5751317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 6332460 |
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| End bp | 6334823 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641300829 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001566710 |
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| Protein GI | 160901128 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0549216 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCAGC AGCACACGAC CCCGTTCTGG CGCAACACCC TGCACACGCT GGCCGTCAGC
GCCATGCTGG CCTGCACCGC TGGCACGACC CAGGCTCAGA CCAACGCACC GGCCGGCGCC
ACGCCCAGCC TGCGCCCCGG CGAGCCTGTG ACACTGAATT TCTCGGGCGC CGACATCGAG
GCCGTCTCGC GCGCCATCGG CGCCATCACC AACCGCAACG TGGTGGTCGA CCCCCGCGTC
AAGGGCCAGA TCACGCTGCT GACCGACAGG CCCGTGCCGC CTGCCACCGC CTACCAGCAG
TTCCTGGCCG CGCTGCGCCT GCAGGGCTTC ACCATTGTCG AATCGGCCGG CCTGTACAAG
GTCATCCCCG AGGCCGACGC CAAGCTGCAG GCCAGCGAAG TGGCCGTGGG CGCGAGCCGC
AGCAGCGCGG GCAGCCAGAT CGTCACCCAG ATCTTCAAGC TCAACTACGA GAACGCGGCC
AACCTGGTGC CCGTGCTGCG CCCGCTGATC AGCCCCAACA ACACCATCAA CGTCAACCCG
GGCAACAACT CGCTGGTCAT CACCGACTAC GCCGACAACC TGCAGCGCAT CTCGCGCATC
GTGGCGACCA TGGATGTGTC CAACGCCACC GATGTCGAAA TCATCCCGCT GCGCCATGCC
GTGGCCACCG ACATGGTGGC CCTGGTCTCG CGCCTGATCG AAGGCGGCAC GGCCAGCCCC
GGCGGCCTCA CCGTGACCGC CGGCGGCGCC AATATTCCGG GCCAGAGCGA CAACGCCTTC
AAGACCTCGC TGATGGCCGA GCCGCGCAGC AACTCCATCG TGCTGCGCGC GGCCAACCCC
GCACGCCTGG CCCAGGTGCG CTCGCTGATC GCGCGGCTGG ACCAGCCCGC CATGAACGGC
GGCGGCGACC AGGGCAACAT CCACGTGGTC TACCTCAAGA ACGCCGACGC CGTGGCGCTG
GCAGCCACCT TGCGCGCAGC CATAGGCGCC CAGGCCACGG CTGCGGGTAC GGCCAGCGGC
CAGCCCGGTG CGGGCGGCAC CACGCCGCAG GGCGGCGGCA TGTCCTCCAT TCCCACCTCG
CAGCCCGTGG TCTCGCGCGA CTCCAGCGGC ACGGCATCCA TGGGCATGGG CTCGTCCTCG
GGCCTGGGCA GCAGCGGAGG GGGCGCCCTG GGCGTGGCCC AGCAGCCGTC CACGGGCGGC
ATGGTCCAGG CCGATCCGTC CACCAACTCG CTGATCATCA CCGCCCCGCC GCCCATCTAC
CGCCAGATGC GCGCCGTGAT CGACAAGCTC GACGGCCGCC GCGCCCAGGT GCTGATCGAA
AGCCTGATCG TCGAGCTCAA GGACAACCGC CTGGCCCAGT TCGGCGTGCA GTGGCAGGCC
ATCCTCAGCA ACAACGGCAA GGTGCTGGGC AGCATCGGCA ACAACTCCAG CGTGGCCGGC
GCCAACATCC TGAGCCTGCT GAGTGCCTTC AACAAGGACG GCAGCATCAA CGCCAGCGGC
ATCACCGGCG ACACGGTGAA CAGCATGCGC GGCACCAACC TGGGCTTCAC GCAGAGCGTC
AACGGCAACA CCACGCTGGG CTTTCTGGCC AACTTCCTGC AGAACAGCGG CGACGCCAAC
ATCCTGTCCA CGCCCAACCT GATGACGCTG GACAACGAGG AGGCGCGCAT CATCGTGGGC
CAGAACGTGC CCATGGTCAC GGGCTCGTAC GCCAGCAATT CCACGGGCGG CACGGTCAAC
CCGTTCACCA CGGTGGAGCG CAAGGACGTG GGCCTGATGC TGCGCGTGCG CCCGCAGATC
AACGAGAACG GCACGGTGAA GCTGGCCGTG TTCCAGGAGG TCTCCTCGGT GGACGAGTCC
ACGCGCAAGG ACACCAACGG CCTGACCACC AACAAGCGCT CCATCGAATC CAACGTGCTG
GTCGAGGACG GCAACATCAT CGTGCTTGGC GGCCTGATCG ACGACAACTA CTCCCAGGCC
GAGGACCGCA TTCCCCTGCT GGGCGACATT CCCGTGCTCG GCAACCTGTT CCGCAACACC
AACCGCAAGC GCAACAAGAC CAACCTGATG GTCTTCCTGC GCCCCGTGGT GATGCGCGAT
GCGGCGGCCA CCAATCAGGT CTCCTCCGAG CGCTACGAAG CCATCCGCGC CCAGCAGCAA
GGACTGCAGC CCGAGCAGAA CGTGCTGCTG CGCTCGGTCA ACGCCGCGCC CGTGCTGCCC
ACGCTGACGC CGCAGCCGGA CCCCGGCACG TTCACCAACC CGGCCGCCAT CGTCAACGTG
CCGGGCGCAA AGCCCGAGCT GATCGACTTC ACCCAGCCGC AGCCCGCCGC TCCCGCCGTG
CCGGCAGCCC CCGGCGCGCT CTGA
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| Protein sequence | MTQQHTTPFW RNTLHTLAVS AMLACTAGTT QAQTNAPAGA TPSLRPGEPV TLNFSGADIE
AVSRAIGAIT NRNVVVDPRV KGQITLLTDR PVPPATAYQQ FLAALRLQGF TIVESAGLYK
VIPEADAKLQ ASEVAVGASR SSAGSQIVTQ IFKLNYENAA NLVPVLRPLI SPNNTINVNP
GNNSLVITDY ADNLQRISRI VATMDVSNAT DVEIIPLRHA VATDMVALVS RLIEGGTASP
GGLTVTAGGA NIPGQSDNAF KTSLMAEPRS NSIVLRAANP ARLAQVRSLI ARLDQPAMNG
GGDQGNIHVV YLKNADAVAL AATLRAAIGA QATAAGTASG QPGAGGTTPQ GGGMSSIPTS
QPVVSRDSSG TASMGMGSSS GLGSSGGGAL GVAQQPSTGG MVQADPSTNS LIITAPPPIY
RQMRAVIDKL DGRRAQVLIE SLIVELKDNR LAQFGVQWQA ILSNNGKVLG SIGNNSSVAG
ANILSLLSAF NKDGSINASG ITGDTVNSMR GTNLGFTQSV NGNTTLGFLA NFLQNSGDAN
ILSTPNLMTL DNEEARIIVG QNVPMVTGSY ASNSTGGTVN PFTTVERKDV GLMLRVRPQI
NENGTVKLAV FQEVSSVDES TRKDTNGLTT NKRSIESNVL VEDGNIIVLG GLIDDNYSQA
EDRIPLLGDI PVLGNLFRNT NRKRNKTNLM VFLRPVVMRD AAATNQVSSE RYEAIRAQQQ
GLQPEQNVLL RSVNAAPVLP TLTPQPDPGT FTNPAAIVNV PGAKPELIDF TQPQPAAPAV
PAAPGAL
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