| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5690 |
|---|
| Symbol | |
|---|
| ID | 5751310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 6327164 |
|---|
| End bp | 6327727 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641300822 |
|---|
| Product | general secretion pathway protein H |
|---|
| Protein accession | YP_001566703 |
|---|
| Protein GI | 160901121 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.138037 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.133551 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACAT CGGCAGCTGG CAATAAGTCG ATGGCCCGGG TGACGGCCCG CAGGGGCCGC
GCCGCACCGC ACCACAGGCC CGCACTCCCG GCGGGCCTGC CTGCTCTCAT GCCCCGCCAG
ACCGCTCCCC TCCCCCTGTC CCCCCCTTCG CGCGGCTTCA CCCTGCTGGA GCTGATGGTC
GTCATCAGCA TCATGGCGAT TGCCGCCGCA GGCGTGAGCC TGTCGCTGCG CGACAGCGGA
CAGGCGCAGC TGGAGCGCGA GGCCGAACGC CTGGCCGCGC TGCTGGAGTC GGCCCGCGCC
CAGGCCCGTG CCAACGGCGT ACCCGTTCGC TGGCGGCCCA TGCCGCAGGG CTTTCGCTTC
GAGGGCCTGC CGGCCAGCGC GCAATTGCCT TCCCAATGGC TGCAGCCCGG TGTGCAGGCG
CAGCCGGCCA CGCCGCTGGT GCTGGGCCCC GAGCCGCTGA TTCCACCCCA GTCCGTCACG
CTGACGCTGC GCGACTCCAC CAGCCCGCCG CTGCGCGTGG CCACGGATGG ACTGCGGCCC
TTTGCCGTGC AGTCCCTGCC ATGA
|
|---|
| Protein sequence | MPTSAAGNKS MARVTARRGR AAPHHRPALP AGLPALMPRQ TAPLPLSPPS RGFTLLELMV
VISIMAIAAA GVSLSLRDSG QAQLEREAER LAALLESARA QARANGVPVR WRPMPQGFRF
EGLPASAQLP SQWLQPGVQA QPATPLVLGP EPLIPPQSVT LTLRDSTSPP LRVATDGLRP
FAVQSLP
|
|---|
| |