Gene Daci_5685 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5685 
Symbol 
ID5751305 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp6323215 
End bp6324768 
Gene Length1554 bp 
Protein Length517 aa 
Translation table11 
GC content66% 
IMG OID641300817 
Productthreonine dehydratase 
Protein accessionYP_001566698 
Protein GI160901116 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1171] Threonine dehydratase 
TIGRFAM ID[TIGR01124] threonine ammonia-lyase, biosynthetic, long form 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000112731 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.257645 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCACC CCCTGACCCC TGCCGACTAC CTGACCAAGA TCCTTACCGC GCGCGTCTAT 
GACGTGGCCG TGGAGTCGGA CCTGGAGCCC GCCAAGGCGC TGAGCCGCCG CCTGCACAAC
AAGGTGCTGC TCAAGCGCGA GGACCAGCAG CCGGTATTCA GCTTCAAACT GCGCGGCGCC
TATAACAAGA TGGCGCACCT GTCGGCCGAG CAGTTGGAAA AGGGCGTGAT CTGCGCCTCG
GCCGGCAACC ATGCGCAAGG CGTGGCCCTG GGCGCACGCA AGCTCGGCTG CCGCGCCGTG
ATCGTGATGC CGACCACCAC GCCCCAGGTC AAGATCGATG CGGTGCAGGC GCTGGGCGGC
GAGGTGGAAC TGGCCGGCGA AAGCTATTCC GACGCCTACA AGCACGCCGT CAAGCTGCAA
AAGGAAAAGG GCCTGACCTT TGTGCACCCC TTCGACGATC CCTACGTGAT CGCCGGCCAG
GGCACGATTG CCATGGAAAT GCTGAGCCAG CTGCAAAAGC TGGGCAGCCC GCGCCTGGAC
GCGGTCTTTG TCGCCATCGG CGGCGGCGGC CTGATCTCGG GCGTGGCCAA CTACATCAAG
GCCGTGCGCC CCGACGTGAA GGTGATCGGC GTGCACACCA AGGATTCGGA CGCCATGCTG
CAGTCCGTGC GCGCCGGCCA CCGCGTGGAG CTGGCCGACG TGGGCCTGTT CGCCGACGGC
ACGGCCGTCA AGCTGGTGGG CGAGGAAACC TTCCGCATCG CCCAGGGCCT GGTGGACGAC
TACGTGGTGG TCGATACCGA CGCCGTCTGC GCCGCGATCA AGGACATCTT CGTGGACACG
CGCTCCATCG TCGAGCCGTC CGGCGCCCTG GCCGTGGCGG CCATCAAGCA GTACGTTGCC
AAGCACAAGA CCAAGGGCGA GACCTATGCC GCCATCCTGT GCGGCGCCAA CATGAACTTC
GACCGGCTGC GCTTCGTGGC CGAGCGGGCC GAGGTGGGCG AGGAGCGCGA GGCCCTGTTC
GCCGTGACCA TCCCCGAGGA GCGCGGCAGC TTCAAGCGCT TTTGCGAAGC GGTGGGCAAG
CTGCCCGGCG GCCCGCGCAA CGTGACCGAA TTCAACTACC GCATCAGCAA CGAGAACAAG
GCCCATGTCT TCGTGGGCCT GACCACGGCG GCACGCGGCG AGTCCGAGAA GATCGCCAGG
AACTTCGAGA AGCAGGGCTT CGAGGCGCTG GACCTGACCT TCGACGACAT GGCCAAGGAG
CATCTGCGCC ACATGGTCGG TGGCCATTCG CCGCTGGCGC AGGAAGAGCG CCTGCTGCGC
TTCGTCTTCC CCGAGCGCCC CGGCGCATTG TTCAAGTTCC TCAGCCTGAT GGCGCCGACC
TGGAACATCT CGCTGTTCCA CTACCGCAAC CAGGGCGCCG ACTACGGCCG CATCCTGGTC
GGCATGCAGG TGCCCGCCAA GGATGGCAAG AAATTCGACG CCTTCCTGAG CAATCTTGGC
TACCCCTGGG TCGAGGAAAC CGCCAACCCG GCCTACCAGC TTTTCCTCAA GTGA
 
Protein sequence
MNHPLTPADY LTKILTARVY DVAVESDLEP AKALSRRLHN KVLLKREDQQ PVFSFKLRGA 
YNKMAHLSAE QLEKGVICAS AGNHAQGVAL GARKLGCRAV IVMPTTTPQV KIDAVQALGG
EVELAGESYS DAYKHAVKLQ KEKGLTFVHP FDDPYVIAGQ GTIAMEMLSQ LQKLGSPRLD
AVFVAIGGGG LISGVANYIK AVRPDVKVIG VHTKDSDAML QSVRAGHRVE LADVGLFADG
TAVKLVGEET FRIAQGLVDD YVVVDTDAVC AAIKDIFVDT RSIVEPSGAL AVAAIKQYVA
KHKTKGETYA AILCGANMNF DRLRFVAERA EVGEEREALF AVTIPEERGS FKRFCEAVGK
LPGGPRNVTE FNYRISNENK AHVFVGLTTA ARGESEKIAR NFEKQGFEAL DLTFDDMAKE
HLRHMVGGHS PLAQEERLLR FVFPERPGAL FKFLSLMAPT WNISLFHYRN QGADYGRILV
GMQVPAKDGK KFDAFLSNLG YPWVEETANP AYQLFLK