Gene Daci_5678 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5678 
Symbol 
ID5751298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp6316973 
End bp6317575 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content70% 
IMG OID641300810 
ProductTetR family transcriptional regulator 
Protein accessionYP_001566691 
Protein GI160901109 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.67022 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTCA CGAAAGCCCA GGCCGCGCAG AACCGGCAGG ACATCCTCGA AGCCGCCGCG 
CGGCTGTACC GCGAGCACGG GCTGGACGGC GTCGGCGTGG CCGAGGTGAC GCGCGGCGCG
GGGCTCACGC ACGGCGGGCT CTATCGCCAC TTCGAATCCA AGGACGCGCT GGTGCGCGAG
GCCTGCGCAC GCGCCTTCGA CTGGTCCATC GCGCCGCTGG ACGGCCTGCA GGGTGAACAG
GCCGGCAGTC TTGCCGCGCG CGTGCAGTCC TATCTGTCGC CACAGCACCG CGACAGCCCC
GGCGAGGGCT GCCCCGCTGC GGCGCTGGCC GTGGACGTGG CCCGGGCAGG CGGCGATCTT
TCAGCGGTGT TCGCCGAAGG GGTGGAACGC AACATCGGCA GATTTGCGCG CGTGATAGGC
ACACTTGGCG ACGATCAGGC ACCCGATGCC ACACAGCGCG CCCAGGCCAT GGCCATGCTC
AGCAGCATGG TGGGCGCCCT GGTCCTGGCA CGCGCCACGG TCGCGGCCAA TCCAGCCTTG
TCCGACGAGA TTCTGAAAAC GGTGCAGGCC CACCTTCTTG CGCCCGAGAG CCAGGCCCGT
TGA
 
Protein sequence
MKVTKAQAAQ NRQDILEAAA RLYREHGLDG VGVAEVTRGA GLTHGGLYRH FESKDALVRE 
ACARAFDWSI APLDGLQGEQ AGSLAARVQS YLSPQHRDSP GEGCPAAALA VDVARAGGDL
SAVFAEGVER NIGRFARVIG TLGDDQAPDA TQRAQAMAML SSMVGALVLA RATVAANPAL
SDEILKTVQA HLLAPESQAR