| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5649 |
|---|
| Symbol | |
|---|
| ID | 5751269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 6281411 |
|---|
| End bp | 6283372 |
|---|
| Gene Length | 1962 bp |
|---|
| Protein Length | 653 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641300781 |
|---|
| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_001566662 |
|---|
| Protein GI | 160901080 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.00169895 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCGA GAGCCTCCCT TGTGGCCTTG CGCCAGGCCC GTCACAGCCT GATGGAGTCG
GGCCTGTGCC CCAGCGGCCT GGTGGACGAG CGCCTGGCGC GCTCGTGGCA GCGCTGCATC
GAGCAGGGAC TGCGTCCCAC AGGACGGCTG GGCGCCGCCG ACAACCTGGA GCAGCATGCG
CTGGGCGTGC TGCGCAGCCG CCACCATGCG CTGCTGGCGC ATTCACGGCC CGTCATGGAA
TACCTGTCCG AGCAGGTGCG CGGCAGCCAC AGCGTGGTGG TGCTGGCCGG CCCCTGCGGC
ACCCTGGTGG ATACCTGCGG CGACCCCTTC TTTCTGGGCA AGGCCGAGCG CGTGGCCCTG
GCCAGCGGCG CGTCCTGGCA TGAGGCGCAG CGCGGCACCA ATGCCATCGG CACGGCACTG
GCCGAGATGG ACTCCATCGA AATCCAGGGC GGCGAGCATT TCCTGGAGCG CAACGGCTTT
CTCACCTGCG CGGCCGCTCC CATCCTGTCG GGCACCGGCC AGCTGCTGGG CATCCTGGAC
ATCTCCAGCG AACATGGCCG GGGCAGCCCG CACACGCTGG GCCTGGTCGG CACGGCGGCC
CGCATGATCG AAAACCGCCT CATGGCCTGC GACGGCCAGC GCCACATCCG CCTGCACCTG
CACGCGCGGC CCGAAGGCAT TGGCACGGTG GCCGAAGGCA TTGCGCTGAT CTCCGCGGAC
GGATGGCTGG TGGGCGCCAA CCGCGCCGCG CTGGCCCTGC TGCGCCTGTC GCGGGGGCAA
CTGGGCAGCG TGTCGCTGGA GCAGGTGCTG GACGCCGGCC TGGAGGAGCT GCTGTCACGC
CAGCACCGCC AGCCCGATGC GGCCCAGCCG CTGCGGCGCC ATGACGGCAC GGCGCTGTTC
GGCCAGCTGG TGCCGGACCG GCGCACGGTC CGGTCCTCGG TCGTGGAACG GGTTGCAGAG
CAACAGCAAC AGGAACAGGC GCCGCAGCAG CCGGCGCGCG ATGCGCTGGC GCGGCTGGAC
ACGGGCGATG CGCGCTGGCG CACGGCGGCC GACAAGGCCC GGCGTGTGCT GGGCAAGCCG
ATTGCGCTGC TCATCCAGGG CGAGTCCGGC GTGGGCAAGG AATGGTTTGC GCGCGCGGCC
CACGACAGCG GGCCGCGCCG CGACGGCCCC TTCGTGGCCA TCAACTGCGC GGCCATGCCC
GAGTCGCTGA TCGAGGCCGA GCTGTTCGGC TACCGCCAGG GCGCCTTCAC GGGCGGGCGG
CGCGAAGGAC AGGCGGGCCT GCTGCGCCAG GCGCACGGCG GCACGCTGTT CCTGGACGAG
ATCGGCGACA TGCCGCTGCC GCTGCAGACC CGGCTGCTGC GCGTGCTGCA GGAGCGGCAG
GTGGTGCCGC TGGGCGGTGG CACGCCCGTT GCGGTCGATT TCGCGCTGGT CAGCGCCTCC
AACCGCAGGC TGCGCGAGGA TGCCGACCAG GGGCGCTTTC GTGCCGACCT GTACTACCGC
ATCAACGGCC TGGCCGTGGA GCTGCCTCCG CTGCGCGAGC GCGGCGACTT CGAGGCGCTG
GCAGCGCGCA TGCTGGCCGA CATCGAACCC GCGCGCCCGC TGCGCATGGC GCCGGCCCTG
CTGGCGCAGC TGGCCGGCCA TGGCTGGCCC GGCAATCTGC GCCAGTGCGC CAGCGTGCTG
AGAACGGCCT GCGCCATGCT CGATCCCCAC GAGGACTGCC TGCAGTGGCA GCACCTGCCC
GACGACTTCC AGGCCGAGCT GGTGCAGACC GCCCGCAGCG GCCCCCGGCT GGACGCTGCG
CCGCAGAGCC TGGATGAACT CTCGCGCTCG GCCGTGCGGC AGGCGCTGGA GAACTGCCGG
GGCAATGTCA CCCAGGCCGC GCGCATGCTG GGCATCAGCC GCCAGACGCT GTACCGCAAG
CTGGCCCAGG ACCGTGCGGC GGACGGCTTG CGGCTGCAGT GA
|
|---|
| Protein sequence | MQSRASLVAL RQARHSLMES GLCPSGLVDE RLARSWQRCI EQGLRPTGRL GAADNLEQHA
LGVLRSRHHA LLAHSRPVME YLSEQVRGSH SVVVLAGPCG TLVDTCGDPF FLGKAERVAL
ASGASWHEAQ RGTNAIGTAL AEMDSIEIQG GEHFLERNGF LTCAAAPILS GTGQLLGILD
ISSEHGRGSP HTLGLVGTAA RMIENRLMAC DGQRHIRLHL HARPEGIGTV AEGIALISAD
GWLVGANRAA LALLRLSRGQ LGSVSLEQVL DAGLEELLSR QHRQPDAAQP LRRHDGTALF
GQLVPDRRTV RSSVVERVAE QQQQEQAPQQ PARDALARLD TGDARWRTAA DKARRVLGKP
IALLIQGESG VGKEWFARAA HDSGPRRDGP FVAINCAAMP ESLIEAELFG YRQGAFTGGR
REGQAGLLRQ AHGGTLFLDE IGDMPLPLQT RLLRVLQERQ VVPLGGGTPV AVDFALVSAS
NRRLREDADQ GRFRADLYYR INGLAVELPP LRERGDFEAL AARMLADIEP ARPLRMAPAL
LAQLAGHGWP GNLRQCASVL RTACAMLDPH EDCLQWQHLP DDFQAELVQT ARSGPRLDAA
PQSLDELSRS AVRQALENCR GNVTQAARML GISRQTLYRK LAQDRAADGL RLQ
|
|---|
| |