| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5645 |
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| Symbol | |
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| ID | 5751265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 6276897 |
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| End bp | 6278768 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641300778 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_001566659 |
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| Protein GI | 160901077 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000773231 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCACGCCA CACCCATCTC CAAAGACGGC CCGCAGCGCG GCGTCGTCGC TGCCTGGGCG
CAGCGCGCCC ATCAAGCGCT GGGACACCTG CTCGGCTTAC CCGTCGCGCT GCTGGTGGCC
ACCGAAATCG CCGTGCTGCT GGCCGGCGTG GTCGCGCGCT ACATGTTCCA CTATCCGTTG
ATCTGGTCGG ATGAGGTCGC CTCGATCCTG TTCCTGTGGC TGGCGATGCT GGGCTCTGCG
GTCGCCTTCC AGCGCGGCGA GCACATGCGC ATGACGGCAG TGGTGGGCAA GCTCGCGCCC
GAAGCGCGCG CCTTCCTTGA TGTGCTTGCC ACCGCAGCGG CGCTGGCATT CCTGCTGCTG
GTGCTGCCGC ATGCATATGA ATACGCAGTG GAGGAGGCGA TGATGCGCAC GCCAGCGCTG
GATCTGCAGA ATTCATGGCG CGCGGCCGCG ATGACCGCAG GCTTCGGGGC GATGGCGCTG
CTGGCCGTAC TGCGGCTCGT CGCGGTGGGG CGGCCGCGCC AAGTGATGGC CGCCGTCGGC
TTGGTCGTCG CCCTGATGGT CGTGATGACG CTGCTGCAAC CGGTGTGGCG ACAGCTCGGC
AACGCCAATC TGGTGGTCTT CTTCGTGGTC GTCGTCGCTG GGGCAGTGTT CGCCGGCGTG
CCGATTGCCT TCGCCTTCGG CCTTGCAACG CTGGGCTATG TGATGCTGGC GACGAACACG
CCCGTTCTGA TCGTCGTCGG TCGCATGGAC GAGGGCGTCA GCCACCTGAT CCTGCTGTCG
GTGCCATTGT TCGTCTTCCT GGGCCAACTG ATCGAGATGA CGGGCATGGC GCGTGCGATG
GTGGCGTTCC TCGCCAGCAT GCTGGGGCAC GTGCGCGGGG GCCTGCATTA CGTGCTGCTT
GGCGCGATGT ATCTCGTCTC CGGCATCTCA GGTTCGAAGG CCGCAGACAT GGCAGCCGCG
GCACCGGTGC TGTTCCCCGA GATGAGGAAG CGCGGCGCCA AGGAAGGCGA CCTGATCGCG
CTGCTGTCGG CCACCGGGGC ACAGACCGAG ACCATTCCGC CATCCATTGT GCTGATCACG
ATAGGCTCGG TCACCGGCGT GTCGATCGCC GCGTTGTTCA CCGGCGGCCT GCTGCCAGGT
CTCGTGCTGG CCGTGACGCT GATGGCGGTA GTGTGGGCCC GCTATCGGCA CGAAGACCTG
AGCGGCGTGC AGCGTGCCAG CCGGCGTGAG ATCGGTCGGG CATTTCTGAT TGCGCTCCCG
GCCATCGCGC TGCCGTTCAT CATCCGCGCC GCTGTGGTGG AAGGTGTCGC GACTGCCACA
GAGGTCTCCA CCATCGGCAT CGCCTACGGC GTGCTCGCCG GCCTGTTGAT CTACCGGCAG
TTCGACTGGA AGCGGGTCTA TCCGATGCTG GTGGATACCG CAAGCCTGTC AGGCTCGATC
CTGCTGATCA TCGGTGCGGC CACCGCGATG GCCTGGGGCC TGACGCAATC GGGCTTCTCG
AACACGCTGA GCCAGGCCAT GCGTGAGCTG CCTGGCGGGG CTGCAGGCTT CATGGCGGTA
TCGGTCGTCG CCTTCATCGT GCTGGGAAGC ATGCTCGAGG GCATCCCCGC GATCGTGCTG
TTTGGCCCAT TGCTGTTCCC GATTGCCCGC ACCGTGGGCA TCCATGAGGT GCACTACTCG
ATGGTGGTCA TCCTCGCGAT GGGCCTCGGC CTGTTCGCGC CGCCTTTCGG TGTGGGTTAC
TACGCCGCTT GCGCGATCGG CCGCGTCAAC CCCGACGAAG GCATCCGACC GATTGGCGCC
TACATGCTGG CCTTGTTCGT CGGCCTCGTG ATCGTCGCGG CGGTGCCGTG GATCTCGATC
GGCTTCCTTT GA
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| Protein sequence | MHATPISKDG PQRGVVAAWA QRAHQALGHL LGLPVALLVA TEIAVLLAGV VARYMFHYPL
IWSDEVASIL FLWLAMLGSA VAFQRGEHMR MTAVVGKLAP EARAFLDVLA TAAALAFLLL
VLPHAYEYAV EEAMMRTPAL DLQNSWRAAA MTAGFGAMAL LAVLRLVAVG RPRQVMAAVG
LVVALMVVMT LLQPVWRQLG NANLVVFFVV VVAGAVFAGV PIAFAFGLAT LGYVMLATNT
PVLIVVGRMD EGVSHLILLS VPLFVFLGQL IEMTGMARAM VAFLASMLGH VRGGLHYVLL
GAMYLVSGIS GSKAADMAAA APVLFPEMRK RGAKEGDLIA LLSATGAQTE TIPPSIVLIT
IGSVTGVSIA ALFTGGLLPG LVLAVTLMAV VWARYRHEDL SGVQRASRRE IGRAFLIALP
AIALPFIIRA AVVEGVATAT EVSTIGIAYG VLAGLLIYRQ FDWKRVYPML VDTASLSGSI
LLIIGAATAM AWGLTQSGFS NTLSQAMREL PGGAAGFMAV SVVAFIVLGS MLEGIPAIVL
FGPLLFPIAR TVGIHEVHYS MVVILAMGLG LFAPPFGVGY YAACAIGRVN PDEGIRPIGA
YMLALFVGLV IVAAVPWISI GFL
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