| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5644 |
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| Symbol | |
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| ID | 5751264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 6275872 |
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| End bp | 6276891 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641300777 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001566658 |
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| Protein GI | 160901076 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.331472 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.00217249 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATTCGA TCGACCGCCG ACGTGCCATC GTGACTGGCG CCGCACTGAT CAGCGCACCG
GCATTGGTGC TGCCGCGCTT CGCGCGCGCC GCCGAATTTA CCTACAAGTT CGGGACCAAC
CTGCCGGCGA CACATCCCCT CAACGTGCGA GCGATGCAGG CCGCTGAGCG CATCCTGAAA
GACACGGGTG GCCAGGTTCA GATCAACGTC TTCCCGAACA ACCAACTTGG CAACGACGCC
GACATGCTCT CGCAGCTGCG CGCAGGCGGG CTCGAGTTCT TCACCGTCTC GGGCGTGAAC
GTGCTGTCGC AGCTCGTGCC CGTCTCATCG ATGTGGGGGC TTGGATTCGC CTGGGCGAAC
GACGAGGCCG TCAACAAGGC GCTGGACGGT GATCTCGGCA AATTTCTGCG CGCGCAGTTC
CCCAAGGTCG GCCTGATGGC GATGGACACC GTGTGGAGTT CCGGCTTCCG GCAGATCACC
AACAGCGTCC GTCCGATCAA CACGCCCGAC GACCTCAAGG GCTTGAAGAT TCGCGTGCCG
GTTAGCCCTC TGTGGACCTC GCTGTTCAAG CATCTCGGCG CCGCACCCAC TTCTATCAAC
TTCGCGGAGA CATATTCGTC TCTGCAGACG AAGGTGGTCG ATGGTCAGGA AAACCCTTTG
GCGATCATCT CGATCGCCAA ACTCTACGAG GTGCAAAAGT ACTGTTCCAT GACCAACCAC
ATGTGGGATG GCTATTGGTG CATGACGAAC CAAAAGGTCT GGAGCCGCAT GCCCGAGAAG
GTAAGGCCCA TCATTGCCAA GCACCTGAAC CAGGCTGCGC TCGACATGCG CGCCGATGGC
GCGAAGCTCG ACGCCTCGTT GCGGCCCGAG CTGACTTCCA GGGGGCTGGC CTTCAACGAC
CCGGAAATCG GGCCGTTCCG TGCGCGGCTT CTTGCGTCGG GCTTCTACGC CGAGTGGAAG
AAGAAGTATG GCGATGAGGC CTGGGCCTTG CTCGAGAAGC ACACCGGCAA GCTGGGCTGA
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| Protein sequence | MNSIDRRRAI VTGAALISAP ALVLPRFARA AEFTYKFGTN LPATHPLNVR AMQAAERILK
DTGGQVQINV FPNNQLGNDA DMLSQLRAGG LEFFTVSGVN VLSQLVPVSS MWGLGFAWAN
DEAVNKALDG DLGKFLRAQF PKVGLMAMDT VWSSGFRQIT NSVRPINTPD DLKGLKIRVP
VSPLWTSLFK HLGAAPTSIN FAETYSSLQT KVVDGQENPL AIISIAKLYE VQKYCSMTNH
MWDGYWCMTN QKVWSRMPEK VRPIIAKHLN QAALDMRADG AKLDASLRPE LTSRGLAFND
PEIGPFRARL LASGFYAEWK KKYGDEAWAL LEKHTGKLG
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