| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5643 |
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| Symbol | |
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| ID | 5751263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 6274444 |
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| End bp | 6275853 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641300776 |
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| Product | type III effector Hrp-dependent outer |
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| Protein accession | YP_001566657 |
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| Protein GI | 160901075 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.856897 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00122307 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGCTTG CCTTCTACGG TGACGATTTC ACCGGGTCCA CCGATGCACT CGAAGTGCTG
GCGTTCGCCG GCCTGAACTG CGCACTGTTC CTCGACGTGC CCGACGAGCA GACGCTGGCC
GAGTTCGGAC CTTTCGACGC GATCGGCGTG GCGGGCGCGA GCCGCGCGAT GTCGCCGACC
GAGATGGACG CGCAACTCGC ACCCGTGCTT GCAGCGATGT CTCGCCTGCC TGTGCCGCTG
GTGCACTACA AGGTCTGCTC GACCTTCGAC AGCTCACCAG CCATCGGCAG CATCGGGCGG
GTCATGGACC TGTCGCGCAC GGCCTTCGGT GACACCGCGA TTCCCATCGT TGCCGCCAAC
CCCGCGCTCG GCCGCTACTG CGCCTTCGGC AATCTGTTCG CGCGCTCCGG CACCGACGAC
CGTGTGCATC GCATCGATCG CCACCCAATC ATGAGCGTGC ACCCTGTGAC GCCGATGCAC
GAGGCGGATC TGGCGCGCCA CCTCGCAGGG CAGACCGCGA TGCCTGTCAC CGGCTTCACG
CTGCCGCAAC TCACACTCGA CCGCACCGAG ATGGCGGGCG AGTTGCAGCG CGTGGTTGAC
GCCACGTCGG GCGGCGCGGT GCTGCTGGAC GGCACCACGA CTGAGCACTT GACCGAGACC
GGCCGGCTGC TCGATGGGCT CGCTGGTGCG GCTCAGGGCC GCCAGACACC CTTGTTCTGC
ATCGGCGGCT CGGGCCTCGA ATATGCGCTG ACGCAGTGGT GGCACGAGAC CGGCGCCCTG
CCATCCATCC CGACTACGCA CGACCGCTTC GACGGCGTGC CGCAGGTGCT GGCCGTCTCA
GGCAGCGCTT CGCCGCTGAG CGCGCTGCAG ATCGACGCAG CCGTTGATGC GGGCTTCGTC
GAGTTGCCGG TGGACGCTGC CGCGTTGGTC GCAGCGAGCG ATCCCGCAGC GGAACTCGCC
CGCCTCGTCG ATCAGGCCCT GCTAGCGCTG CGCGCCGGCC ACAGCGTGAT GCTGCACAGC
GCGCGCGGCC CGAAGGACCC GCGTATCGAA GCGATGCTGT CCGCGCTCGC CAAGCAAGGC
ATCAGCCGGG AGCAGGCCCG CCACGAAGGC GGCCGCCTGC TGGGACACCG CTTCGGCGAC
CTCGTCGATG CGCTGCTGCG TGCACATCCC CTCAAGCGCC TGCTGCTGTC GGGCGGCGAT
ACCTCCAGCC ACGTCACGCA GCGACTAGCC CCGCAGGCTC TGCGCGTCGT CGCCCGGTTG
GCGCCAGGCG CTCCGCTGTG CCGCGCCATC TCGCGCGAGC CGCACCTGGC ACAGCTCGAA
ATTGCGCTCA AGGGCGGCCA GATGGGCCAG CCCGACTATT TCGTCAAGGC GTTGCTCGGC
ACGGCCGACG CCCACCTCTC ACTTGCATAA
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| Protein sequence | MKLAFYGDDF TGSTDALEVL AFAGLNCALF LDVPDEQTLA EFGPFDAIGV AGASRAMSPT
EMDAQLAPVL AAMSRLPVPL VHYKVCSTFD SSPAIGSIGR VMDLSRTAFG DTAIPIVAAN
PALGRYCAFG NLFARSGTDD RVHRIDRHPI MSVHPVTPMH EADLARHLAG QTAMPVTGFT
LPQLTLDRTE MAGELQRVVD ATSGGAVLLD GTTTEHLTET GRLLDGLAGA AQGRQTPLFC
IGGSGLEYAL TQWWHETGAL PSIPTTHDRF DGVPQVLAVS GSASPLSALQ IDAAVDAGFV
ELPVDAAALV AASDPAAELA RLVDQALLAL RAGHSVMLHS ARGPKDPRIE AMLSALAKQG
ISREQARHEG GRLLGHRFGD LVDALLRAHP LKRLLLSGGD TSSHVTQRLA PQALRVVARL
APGAPLCRAI SREPHLAQLE IALKGGQMGQ PDYFVKALLG TADAHLSLA
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