| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5558 |
|---|
| Symbol | |
|---|
| ID | 5751178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 6175873 |
|---|
| End bp | 6180603 |
|---|
| Gene Length | 4731 bp |
|---|
| Protein Length | 1576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641300691 |
|---|
| Product | glutamate synthase (ferredoxin) |
|---|
| Protein accession | YP_001566572 |
|---|
| Protein GI | 160900990 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.155469 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.943679 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGG CTGCCGAGAT CAAGCATCTC CAAGACCACG GTCTGTACTC CAAGAGCAAC
GAGCACGACG CCTGCGGCCT CGGCTTTGTT GCACATATCA AGGGCGTCAA GCGCCATGAC
ATCGTCACCG GCGCGCTCAA GATCCTCGAA AACATCGACC ATCGCGGCGC CGTGGGCGCC
GACAAGCTCA TGGGCGATGG CGCGGGCATT CTGATCCAGA TTCCCGACCA GCTCTACCGC
GAAGAGATGG CAAAGCAGGG CGTGGCCCTG CCGCCGGCGG GCGAGTACGG CGTGGGCATG
ATCTTCCTGC CCAAGGAGCA TGCCTCGCGC CTGGCCTGCG AGCAGGAGAT GGAACGCGCC
ATCAAGGCCG AAGGCCAGGT CCTGCTGGGC TGGCGCGATG TGCCCGTGAA CCGCGACATG
CCCATGTCGC CCACGGTCCA GGAAAAGGAA CCCATCCTGC GCCAGGTCTT CATCGGCCGC
GGCGCCGACG TGATCGTGCA GGACGCGCTC GAGCGCAAGC TGTACGTGAT CCGCAAGACG
GCCAGCGCCG CCATCCAGAA CCTCAAGCTC AAGCACAGCA AGGAATACTA CGTTCCCAGC
ATGAGCAGCC GCACCGTGGT CTACAAGGGC CTGCTGCTGG CCGACCAGGT GGGCGTGTAC
TACAACGACC TGTCCGACGA GCGCTGCGTC TCGGCCATCG GCCTGGTGCA CCAGCGCTTC
TCGACCAACA CCTTCCCCGA GTGGCCGCTG GCCCACCCCT ACCGCTACGT GGCCCACAAC
GGTGAAATCA ACACCGTGCG CGGCAACTAC AACTGGATGC TGGCGCGCGA AGGCGTGATG
GCCTCGCCCG TGCTGGCCGA GGACCTCAAG AAGCTCTATC CCATCAGCTT CGCTGGCCAG
TCCGACACGG CAACGTTCGA CAACTGCCTG GAACTGCTGA CCATGGCCGG CTACCCCATC
AGCCAGGCCG TGATGATGAT GATTCCCGAG CCCTGGGAGC AGCACGAGTC CATGGACGAG
CGCCGCCGCG CCTTCTATGA ATACCACGCC GCCATGATGG AGCCCTGGGA CGGCCCGGCC
TCCATCGTGT TCACCGACGG CCGCCAGATC GGCGCCACGC TGGACCGCAA CGGCCTGCGC
CCCTCGCGCT ACGTGATCAC CGATGACGAC CTGGTCATCC TGGCGTCCGA GGCCGGCGTG
CTGCCCGTGC CCGACAGCTC CATCGTGCGC AAGTGGCGCC TGCAGCCCGG CAAGATGCTG
CTGATCGACC TGGAGCAGGG CCGCCTGATC GAGGACGACG AGCTCAAGGC CAACATCGTC
AACACCAAGC CCTACAAGCA GTGGATCGAG AACCTGCGCA TCAAGCTGGG CAGCGTGGGC
GGTGACACCC ATGCCGGCCC CGAGGCCGCC AGCCTGCCGC TGCTCGAGCG CCAGCAGGCC
TTCGGCTTCA CGCAGGAAGA CATCAAGTTC CTGCTGGCCC CCATGGCCAA GAACGGCGAG
GAAGGCATCG GCTCCATGGG CAACGACAGC CCGCTGGCCG TGCTGTCGGA CAAGAACAAG
CCGCTGTACA ACTACTTCCG CCAGATGTTC GCGCAGGTGA CCAACCCGCC GATCGACCCC
ATCCGCGAAG CCATCGTGAT GTCGCTGGTG TCCTTCATCG GACCCAAGCC CAACCTGCTG
GACATCAACC AGGTCAACCC GCCCATGCGC CTCGAAGTGC ACCAGCCCGT GCTGGACTTC
GCCGACATGG CCAAGCTGCG CGACATCGAA CGCCACACGC AGGGCAAGTT CAAGAGCGCA
ACGATCGACA TCACCTACCC GCTGTCCTGG GGCAAGCAGG GCGTGGAAGC CAAGCTGGCA
TCGCTGTGCG CGCAGGCCGT GGACGCCATC AAGGGTGGTG CCAACATCCT GATCATCAGT
GACCGCCATG TGAGCGCCAC CCAGGTGGCC ATCCCCGCGC TGCTGGCGCT GTCGGCCATC
CACCAGCACC TGGTGCGCGA GGGCCTGCGC ACCACGGCCG GCCTGGTCGT GGAAACGGGC
ACGGCGCGCG AAGTGCACCA CTTCGCCGTG CTGGCAGGCT ACGGCGCCGA GGCCGTGCAT
CCCTACCTGG CCATGGAAAC CCTGGCCGAT ATGCACAAGG AGCTGGGCGG CGACCTGTCG
GCCGACAAGG CCATCTACAA CTACGTCAAG GCCATCGGCA AGGGCCTGTC CAAGATCATG
TCCAAGATGG GCGTGTCCAC CTACATGTCC TATTGCGGCG CCCAGCTGTT CGAGGTGATC
GGCCTGAACA GCGACACCGT GGACAAGTAC TTCACCGGCA CGGCCAGCCG CGTCGAGGGT
ATCGGCGTCT TCGAGATCGC CGAGGAAACC ATCCGCAACC ACCGCGCGGC CTTCGGTGAC
GATCCCGTGC TGGAAACCAT GCTGGACGCC GGCGGCGAAT ACGCCTGGCG CGCCCGTGGC
GAAGAGCACA TGTGGTCGCC CGACGCCATC GCCAAGCTGC AGCATTCCAC GCGCTCCAAC
AACTGGAGCA CGTACAAGGA ATACGCCCAG CTGATCAACG ACCAGAGCAA GCGCCACATG
ACGCTGCGCG GCCTGTTCGA GTTCAAGTTC GACCCGGCCA AGGCCATTGC GCTGGACCAG
GTCGAATCGG CCAAGGAGAT CGTCAAGCGC TTTGCCACGG GCGCCATGTC CCTGGGCTCG
ATCAGCACCG AGGCCCATGC CACGCTGGCC GTGGCCATGA ACCGCATCGG CGGCAAGAGC
AACACCGGCG AAGGCGGGGA AGATCCCCAG CGCTACCGCA ACGAGCTCAA GGGCATCCCG
ATCAAGAAGG GCGAGACCCT GGGCTCCATC ATTGGCGCCG ACAAGGTCGA GGCCGACATC
GAGCTGCAGG ACGGCGACTC GCTGCGCTCC AGGATCAAGC AAGTGGCATC GGGCCGCTTC
GGCGTCACGG CCGAGTACCT GTCGTCCTCG GACCAGGTGC AGATCAAGAT GGCCCAGGGC
GCCAAGCCCG GCGAAGGCGG CCAGCTGCCC GGCGGCAAGG TGTCCGACTA CATCGGCAAG
CTGCGCCACT CCGTGCCCGG CGTCGGCCTG ATCTCGCCCC CGCCCCACCA CGACATCTAC
TCCATCGAGG ATCTGGCCCA GCTGATCCAC GACCTGAAGA ACGTGGCGCC GCACGCCGAC
ATCTCGGTCA AGCTCGTGTC CGAAGTGGGC GTGGGCACCA TCGCGGCCGG CGTGGCCAAG
TGCAAGAGCG ACCACGTGGT CATCGCGGGG CACGACGGCG GCACGGGCGC ATCGCCCTGG
TCGTCCATCA AGCATGCGGG CTCGCCCTGG GAAATCGGCC TGGCCGAGAC CCAGCAGACC
CTGGTGCTCA ACCGCCTGCG CGGCCGCATC CGCGTTCAGG CCGACGGCCA GATGAAGACC
GGCCGCGACG TCGTCATCGG CGCGCTGCTG GGCGCCGACG AGTTCGGCTT CGCCACGGCG
CCCCTGGTCG TCGAGGGCTG CATCATGATG CGCAAGTGCC ACCTGAACAC CTGCCCCGTG
GGCGTGGCCA CGCAGGACCC GGTGCTGCGC GCCAAGTTCT CGGGCAAGCC CGAGCATGTG
GTGAACTACT TCTTCTTCAT CGCCGAGGAA GTGCGCCAGA TCATGGCCCA GCTGGGCGTT
GCCAAGTTCG ACGACCTGAT CGGCCGTGCC GACCTGCTGG ACACCCGCAA GGGCCTGCAG
CACTGGAAGG CCCAGGGCCT GGACTTCTCG CGCCTGTTCG CCCAGCCCGA AGTGCCCGCC
GACGTGGCGC GCTTCCATGT CGAAAAGCAG GACCACCTGC TGGACAAGGC GCTGGACGTG
AAGCTCATCG AGCGCTGCAA GCCCGCCATC GAGAACGGCG AGCGCGTGCG CATCATGGAA
GTGGCGCGCA ACGTGAACCG CTCCGTGGGC GCCATGCTCT CCGGTGCCGT GACGCGCGTG
CATCCCGAAG GCCTGCCGGA TGACACCATC CGCATCCACT TCGAGGGAAC CGGCGGCCAG
TCCTTCGGCG CCTTCCTGTG CAACGGCATC ACGCTGAACC TGCGCGGCGA TGCCAACGAC
TACACGGGCA AGGGCCTGTC CGGCGGCCGC GTGGTGGTGC ATGCCAGCCA TGAATTCCGT
GGCGACACGA CGACCAACAC CATCGTCGGC AACACCGTGA TGTTCGGCGC CACCAGCGGC
GAGGCCTTCT TCGGCGGCGT GGCCGGCGAG CGTTTCGCGG TCCGCCTGTC GGGCGCCACG
GCCGTGGTCG AGGGCGTGGG CGACCACGGC TGCGAATACA TGACCGGCGG CACCGTGGTG
GTGCTGGGCA AGACGGGCCG CAACTTCGCG GCCGGCATGA GCGGCGGCGT GGCCTATGTG
TATGACGAGG ATGGCCGCTT CGCCGAGCGC TGCAACAAGG CGTCCGTCTC GCTGGACCAG
GTGCTGCCCC ACGACGAGCA CCTGGCCCAG GTTTCGCCCG CCGTCTGGCA CCGCCGCGAA
ACCGACGAAC GCCAGCTGCG CGCACTGATC GAGGCGCACA GCCGCTGGAC TGGCTCCAAG
CGTGCACGCG ACCTGCTGGA CAACTGGGCG GCGGCCCGCT CCAAGTTCGT CAAGGTCTTC
CCCAGCGAGT ACAAGCGCGC CCTGTCCGAG ATGTACGAGC GCCAGGTGAT GGAAGAGCCC
GCCACGCCCG AGGTCGAGGA ACACGCCAAG GAGGCGGTGG CCGCCAAATA A
|
|---|
| Protein sequence | MTTAAEIKHL QDHGLYSKSN EHDACGLGFV AHIKGVKRHD IVTGALKILE NIDHRGAVGA
DKLMGDGAGI LIQIPDQLYR EEMAKQGVAL PPAGEYGVGM IFLPKEHASR LACEQEMERA
IKAEGQVLLG WRDVPVNRDM PMSPTVQEKE PILRQVFIGR GADVIVQDAL ERKLYVIRKT
ASAAIQNLKL KHSKEYYVPS MSSRTVVYKG LLLADQVGVY YNDLSDERCV SAIGLVHQRF
STNTFPEWPL AHPYRYVAHN GEINTVRGNY NWMLAREGVM ASPVLAEDLK KLYPISFAGQ
SDTATFDNCL ELLTMAGYPI SQAVMMMIPE PWEQHESMDE RRRAFYEYHA AMMEPWDGPA
SIVFTDGRQI GATLDRNGLR PSRYVITDDD LVILASEAGV LPVPDSSIVR KWRLQPGKML
LIDLEQGRLI EDDELKANIV NTKPYKQWIE NLRIKLGSVG GDTHAGPEAA SLPLLERQQA
FGFTQEDIKF LLAPMAKNGE EGIGSMGNDS PLAVLSDKNK PLYNYFRQMF AQVTNPPIDP
IREAIVMSLV SFIGPKPNLL DINQVNPPMR LEVHQPVLDF ADMAKLRDIE RHTQGKFKSA
TIDITYPLSW GKQGVEAKLA SLCAQAVDAI KGGANILIIS DRHVSATQVA IPALLALSAI
HQHLVREGLR TTAGLVVETG TAREVHHFAV LAGYGAEAVH PYLAMETLAD MHKELGGDLS
ADKAIYNYVK AIGKGLSKIM SKMGVSTYMS YCGAQLFEVI GLNSDTVDKY FTGTASRVEG
IGVFEIAEET IRNHRAAFGD DPVLETMLDA GGEYAWRARG EEHMWSPDAI AKLQHSTRSN
NWSTYKEYAQ LINDQSKRHM TLRGLFEFKF DPAKAIALDQ VESAKEIVKR FATGAMSLGS
ISTEAHATLA VAMNRIGGKS NTGEGGEDPQ RYRNELKGIP IKKGETLGSI IGADKVEADI
ELQDGDSLRS RIKQVASGRF GVTAEYLSSS DQVQIKMAQG AKPGEGGQLP GGKVSDYIGK
LRHSVPGVGL ISPPPHHDIY SIEDLAQLIH DLKNVAPHAD ISVKLVSEVG VGTIAAGVAK
CKSDHVVIAG HDGGTGASPW SSIKHAGSPW EIGLAETQQT LVLNRLRGRI RVQADGQMKT
GRDVVIGALL GADEFGFATA PLVVEGCIMM RKCHLNTCPV GVATQDPVLR AKFSGKPEHV
VNYFFFIAEE VRQIMAQLGV AKFDDLIGRA DLLDTRKGLQ HWKAQGLDFS RLFAQPEVPA
DVARFHVEKQ DHLLDKALDV KLIERCKPAI ENGERVRIME VARNVNRSVG AMLSGAVTRV
HPEGLPDDTI RIHFEGTGGQ SFGAFLCNGI TLNLRGDAND YTGKGLSGGR VVVHASHEFR
GDTTTNTIVG NTVMFGATSG EAFFGGVAGE RFAVRLSGAT AVVEGVGDHG CEYMTGGTVV
VLGKTGRNFA AGMSGGVAYV YDEDGRFAER CNKASVSLDQ VLPHDEHLAQ VSPAVWHRRE
TDERQLRALI EAHSRWTGSK RARDLLDNWA AARSKFVKVF PSEYKRALSE MYERQVMEEP
ATPEVEEHAK EAVAAK
|
|---|
| |