| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5545 |
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| Symbol | |
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| ID | 5751165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 6160452 |
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| End bp | 6164291 |
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| Gene Length | 3840 bp |
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| Protein Length | 1279 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641300678 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001566559 |
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| Protein GI | 160900977 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.768449 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCGAACT CCAAGCGCAA TGCCGGGGGC TCTGAGCGCC CCATCACGGT TCCCTTCTGG
CTGATCGCGC TGCTGGCGGT ACTGATCGGT GGCGCCCTGT GGATGCTGTT TCCCAAGCAG
GATCTGGAGC GCCGGCTCTC CGTCACCGGA GATGACTCCG AGCTGTCCTA CAACTACCTG
AGCAACCTGC TCAAGAGCGA TCCCGGCAAC GAGAACCTGC GCGCCCTGCT CAAGGCCAAG
GAAGAGCGCC TGCAGGCCAT CAAGCTGGCG CGGGAAGAGG CGGCCAAGCA GGCACTGCCC
AGCGCAGCCG TCCAGGCCTG GGACCACTGG CAGGCCGCCT ACCAGGGCTA TCTGGAGGCG
CAAAAGCAGG ACCACCGCGC GGGCGGCCAG GCTGAGGCGC TGGCGCCGCA GGTGATGCAG
GCGTTGAAGG ACGTGCCGCT GCAGGGGCTG ACCCAGGAGC AGGCGCTGTA CCTGGCCTCG
TCGGCGCTGG TGCTCAAGGA CGCACCGCTG GCCCTGGGCA TCTACGACGA CGTGGCAGAG
CGCCAGGCCG ATCCCGCGCG CAAGGCGCAG GTCTATGAAT CCGCAGCGCG GCAGGCGCTG
GGCATGTCCC TGTACGAGGA ATCGGCCCGG CTGCTGCGCC AGGCCAGCGC CACGACCGAG
GACGTCCAGC AGTCGCGCGC CTACCTCTGG CAGGCCCTGC AGGTACTGCA GTCCGGCAAC
CGTGCCAACG AAGCGCTGGC GCTGGCGCGC CAGCAGGAAG AACTGCTGGG CAGCGACCCC
GAGACGCTAC GAAAGCTCAT CGGCCTGGCG CGCGCGGCCG GCAACCGGGC CGAGGCCGAG
CGCTATGCCA AGCGGCTGCT GCAGCTGTCG CTGCTGCAGC AATGGCAGAC GCAGGTGGCC
GGGGCTTCGG GCGCCGGTCC GGACCCGGTT GCCGACGACG GCGCCTGGGC GCTGCAGCCC
GTGGCCTGGA CCGCGCCGGG CTGGCGCATG CTGCGCACGG CCGATCCCGT GCGCAAGCCG
CCGCCGGGCC TGCCCTTTGA CGACAAGACC TACCTGCTGG GCTACGAGGT ATTCCTCGAA
AACCGCAACC TGGAAGATGC CTGGCGCGTG GCCACGGCCG CCGTGCGCCA GGCGCCGCAG
GACATGGCCT GGCGCGAACG CCTGGCCCAG GTGTCCGAAT GGATGGGGCA GCAGCAGCAG
GCCCTGGACA ACTGGCTGGT CATTGCGCAG AACACGGGGC GCGAGGATGC CTGGAAGACG
GTGATGCGCC TGGCGCCGGG CCTGTTCGAC GACCGCGCCC TGATTGCCGG CCTGCGCCAC
CAGTTGAGCC GCCGTCCCCA GGATGCCGCG CTGCAGCAGG CGCTGGTCCA GGCCTACGAG
CGCCAGGCCG AGCCCGGCGA GGCCATCGAC TATCTGCAAA AGCACGGCAG CACGCCGCAG
TCGCAGATCC TGCTGGCCCA ACTGGCCGAA CGCGCAGGCC GGTCGCAACT GGCGCTGCAG
GCCTGGAAGC GTGTGCTTGC CGATCCCGAA CAGCGCACGC CGGCCCATGC CATGCCCGCC
GCCGTGCTCG CGCTGCTGCA GGGCGAGCCG GCCCTGGGTC TGCGCTGGCT GGAGGATGCG
CAGACGCGCA TTCCCGCCGG CATGCAGGAC GAGGGCGAGT ACTGGCGCCT GCTGGGCGAC
CTGGCCCAGG ACCAGCGCCA GGAAGCACTG ACGCTGAAGG CCTACCGCCG CCTGCTGCAG
ACGCCGCACG CCGGCATCAG CGACTACGAC GAGGTGATAC GCCTGCTGCA GCGCGCCGAC
CGGCGCGAGG CGGCCCGGAT GTCCCTGCAC GCCTGGGAGC AGTTCCATGA CGTGCGCCAT
CTGACGCAGG CCTTCTACCT GCTGGAGGAC CTGGAGGACT GGACCCAGAT CGGCAGCCAG
GTCGAACGCA TCTTGGCCGA CCCGGCCCTG GTCAAGCGCC TGCAGGGCCA GCCCACCTTC
TTCCAGATAC TGGGCGCCTA CTACCAGCGC ACGGCGCAAT CGAAAAAGGC CATGGAGGCC
TTCGAGAAGG GCCTGGCGCT GGACCCCGGC TCCACGCCGC TGCGCCAGGG CCTGATGTGG
CTGCTGATCG ACACGCAGAA TGCAGCGGCC CTCAAGCTGC TGCTGGCGGC GGCCGAGCCT
GTCTGGGCGC GCGATGCCGA CATGCACGGC GCCCTGGCGG CGGCCTACAT GACGCTGTCG
CGCCCGGCCG TTGCGCTGGA ACGCTATCTG AAGCCGCACC GCGCCGAGCA TGCCGACGAC
TTCCTGTGGA TGATGCAGTA CGCCGACGCG CTGGAGCAGA ACCAGCAGGC CGATCGGGCC
TGGAGCCTGA GGCAGCAGCT GTGGACGCGC GAGAAGGTGC GGGCACGCGC CCAGGACGGC
GCAGCGGCCC TGGCCGCCCG CAAATGGCTG ACGGCCGAGG GGCTGGACGA GGTTCAGCGC
CAGGCCCGCA GCCGGCTCAT GCTCTTTCAT ACCCAGGGCG ATGCCGAATT CGCCCTGATG
CGCGAGCTGC TGCGCATGGA CCTGGAAGGC GGGCGCCGCG AGCATTCCGC CGCGGCGGCC
GAGCTGGCCA TTGCCTGGCT GCAGGAGCGC GGCGAGTACC AGGCCGAGCG TGGCTACCTG
TGGCAGCAGT ACGCGCGCAG CCGCAGCAAG AGCACCAGCT CGCCGCTGTG GGCCGAGATC
ACGGTGGCCC TGGCGGAAAA GGATGTGGCC CAGGCCGGGC AGCTGCTGCA GCGCCATGAC
GAGGCGCTGC CGCGCTATGA CCGCATCAAC GCGGCAGCCA TGGTCGGCGA TGTGCGGCTG
GCGCAGACGG CGGCCTTCGA GAGCATGGCC GACCAGCCCG ACGACGATCC CCTGCACCTG
GCGCTGACCG AGCAGCTGCT GGCCTTCAGC GACTACGGCG GCCTGCAACT GCGCAACCGC
CGCATGGACG CCATCGACGA GCAGGTCTCC CGGCTGCGCT GGCATGTGGG CCTGAACCCC
CGCTGGGCGC TGGACCTGGA TGCCGAGGAC GTGCGCCGCA CGGTCAACAA AAACACCCTG
GTGCGCGGCC CCTCGCAGGA GCGGGGCATC GGCCTGCGCC TGACGCGCAA GACGCAGTCG
GCCTCCAGCG AATTCATGCT GGGCCGGCGC GAAAGCCTGG AGGGCTACAC GCCCATGCAG
TTCACGCAGA CTTACAACGT GGACAGCCGC TGGAGCCTGC AGGCATCACT GGGCCGGCAC
CTGGCCACGC AGGAAACGCT GGCCATGCGC ATGGGCGGCA TGAAGGACCG CGTGTCGCTG
GGCAGCAGCT ACCAGCTCTC GCGCCTGGAC CAGATCACGC TGGAGCTGGC ATCTGAGCGC
TACCGCGTGC AAAGCGGCGC ACGCGTGGGC TCCGGCAACC ATGCGACGCT GCAATACCTG
CATACCTACC GCAGCGAGGC GCCCACCCTG CAGTTCGGCG CCTTCACCTC CTGGCACCGC
TACAGCCGCA ACGACCCGGC GCTGCTGCAG GGCCGGGATG CGGCCATCCT GGGTTACCTG
CCGCCGTTCA ACGATCCCAC CATCGACTAT CTGCTGCCGC GCAGTTTCCG CTTCTCGGGC
CTGCAGATGA TGTTCAACAC GGGCTACGAG CAGCAGTACA CGCGTGCGCT GCGGCCCTAC
GCCAGCCTGG CCCTGACGCA CCACAGCGTC AACGGCGCGG GCTACGAGCT GGGCATGGGC
CTGGCCACCA GCCTGTTCGG CGCGGACCAC CTCGCCCTGG GCCTGAATCT GTCCAAGTCG
GGCATCAACA CCGTGGGCAA TACCCGCGAG CTGTTGCTGA CCTACCGCCT TCACTACTGA
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| Protein sequence | MSNSKRNAGG SERPITVPFW LIALLAVLIG GALWMLFPKQ DLERRLSVTG DDSELSYNYL
SNLLKSDPGN ENLRALLKAK EERLQAIKLA REEAAKQALP SAAVQAWDHW QAAYQGYLEA
QKQDHRAGGQ AEALAPQVMQ ALKDVPLQGL TQEQALYLAS SALVLKDAPL ALGIYDDVAE
RQADPARKAQ VYESAARQAL GMSLYEESAR LLRQASATTE DVQQSRAYLW QALQVLQSGN
RANEALALAR QQEELLGSDP ETLRKLIGLA RAAGNRAEAE RYAKRLLQLS LLQQWQTQVA
GASGAGPDPV ADDGAWALQP VAWTAPGWRM LRTADPVRKP PPGLPFDDKT YLLGYEVFLE
NRNLEDAWRV ATAAVRQAPQ DMAWRERLAQ VSEWMGQQQQ ALDNWLVIAQ NTGREDAWKT
VMRLAPGLFD DRALIAGLRH QLSRRPQDAA LQQALVQAYE RQAEPGEAID YLQKHGSTPQ
SQILLAQLAE RAGRSQLALQ AWKRVLADPE QRTPAHAMPA AVLALLQGEP ALGLRWLEDA
QTRIPAGMQD EGEYWRLLGD LAQDQRQEAL TLKAYRRLLQ TPHAGISDYD EVIRLLQRAD
RREAARMSLH AWEQFHDVRH LTQAFYLLED LEDWTQIGSQ VERILADPAL VKRLQGQPTF
FQILGAYYQR TAQSKKAMEA FEKGLALDPG STPLRQGLMW LLIDTQNAAA LKLLLAAAEP
VWARDADMHG ALAAAYMTLS RPAVALERYL KPHRAEHADD FLWMMQYADA LEQNQQADRA
WSLRQQLWTR EKVRARAQDG AAALAARKWL TAEGLDEVQR QARSRLMLFH TQGDAEFALM
RELLRMDLEG GRREHSAAAA ELAIAWLQER GEYQAERGYL WQQYARSRSK STSSPLWAEI
TVALAEKDVA QAGQLLQRHD EALPRYDRIN AAAMVGDVRL AQTAAFESMA DQPDDDPLHL
ALTEQLLAFS DYGGLQLRNR RMDAIDEQVS RLRWHVGLNP RWALDLDAED VRRTVNKNTL
VRGPSQERGI GLRLTRKTQS ASSEFMLGRR ESLEGYTPMQ FTQTYNVDSR WSLQASLGRH
LATQETLAMR MGGMKDRVSL GSSYQLSRLD QITLELASER YRVQSGARVG SGNHATLQYL
HTYRSEAPTL QFGAFTSWHR YSRNDPALLQ GRDAAILGYL PPFNDPTIDY LLPRSFRFSG
LQMMFNTGYE QQYTRALRPY ASLALTHHSV NGAGYELGMG LATSLFGADH LALGLNLSKS
GINTVGNTRE LLLTYRLHY
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