Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_5489 |
Symbol | |
ID | 5751108 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 6093959 |
End bp | 6095176 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 641300621 |
Product | type II secretion system protein |
Protein accession | YP_001566503 |
Protein GI | 160900921 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.759932 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.0666494 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCACAG CCGCGTCCAA AGGAATCAAG GAATTTGTCT TTGAATGGGA GGGCAAGGAT CGCAACGGCA AGATCGTCCG CGGCGAAACC CGGGCCGGGG GCATCAATCA GGTCCAGGCC ATGCTGCGCC GTCAGGGCGT GCTTCCCAGC AAGATCAAGA AGCGCCGTAC GCGCGGCGGC AAGAAGATCA AGCCCAAGGA CATCGCGCTG TTCACGCGCC AGATGGCCAC GATGATGAAG GCCGGCGTCC CTCTGCTGCA GGCCTTCGAC ATCGTCGGGC GCGGCAACAC CAACCCCAGT GTGACGCGCC TGCTGGCCGA TATCCGCTCC GACGTGGAGA CCGGCACCTC ACTGAATGCG GCCTATCGCA AGCACCCCCT TTACTTCGAC AGCCTCTACT GCAATCTGGT GGAGGCAGGC GAAGCTGCCG GTATCCTGGA AGCCCTGCTG GACCGCCTGG CCACCTACAT GGAGAAGACC GAAGCCATCA AGTCCAAGAT CAAGTCGGCG TTGATGTATC CGATTTCGGT GGTCGTTGTG GCCTTCATCG TCGTGACCAT CATCATGCTT TTCGTGATCC CGGCCTTCAA GGACGTGTTC AGCTCGTTCG GTGCGGATCT GCCGGCCCCG ACTCTGTTCG TGATGGGTGT CAGCGACATC TTTGTCCAAT GGTGGTGGGT AATCTTCGGC GTGATCGGAG GCGGCTTCTA CTTCTTCATG CAGGCCTGGA AGCGCAATGA GCGCATGCAG CAGTTCATGG ATCGTGCAAT GTTGAAGATG CCGGTCTTTG GCGCATTGAT CGAAAAGTCC TGCGTTGCAC GCTGGACGCG CACGCTGTCG ACCATGTTTG CTGCAGGCGT TCCGCTGGTC GAAGCACTGG ATTCCGTCGG CGGCGCCTCC GGGAATGCCA TCTACGCCAA TGCCACCGAG AAGATCCAGC AGGAAGTCTC CACCGGCACC AGCCTCACGG TGGCCATGAC CAATGCCAAC GTCTTTCCCT CCATGGTGCT GCAGATGTGC GCCATCGGCG AGGAATCCGG CTCCATCGAC CACATGCTTG GCAAAGCAGC CGATTTCTAC GAGGAAGAGG TCGATGACAT GGTGGCAGGC CTGTCCAGCC TGATGGAGCC TATCATCATT GTTTTCCTGG GCACCCTCAT CGGCGGCATC GTGGTTTCGA TGTACCTGCC CATCTTCAAG CTGGGTCAGG TGGTCTGA
|
Protein sequence | MATAASKGIK EFVFEWEGKD RNGKIVRGET RAGGINQVQA MLRRQGVLPS KIKKRRTRGG KKIKPKDIAL FTRQMATMMK AGVPLLQAFD IVGRGNTNPS VTRLLADIRS DVETGTSLNA AYRKHPLYFD SLYCNLVEAG EAAGILEALL DRLATYMEKT EAIKSKIKSA LMYPISVVVV AFIVVTIIML FVIPAFKDVF SSFGADLPAP TLFVMGVSDI FVQWWWVIFG VIGGGFYFFM QAWKRNERMQ QFMDRAMLKM PVFGALIEKS CVARWTRTLS TMFAAGVPLV EALDSVGGAS GNAIYANATE KIQQEVSTGT SLTVAMTNAN VFPSMVLQMC AIGEESGSID HMLGKAADFY EEEVDDMVAG LSSLMEPIII VFLGTLIGGI VVSMYLPIFK LGQVV
|
| |