| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5488 |
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| Symbol | |
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| ID | 5751107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 6092178 |
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| End bp | 6093920 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641300620 |
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| Product | type IV-A pilus assembly ATPase PilB |
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| Protein accession | YP_001566502 |
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| Protein GI | 160900920 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.388204 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.1076 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGTTG CTGACTCCTC GCTCAAGAAT GCTTCCGCTG TTGCATCGCT TCCCGGCATC
GGGCGAGCCC TGATATCAGC AGGCAAGGTA TCGCAGCAGG CAGCGGAAGC CGCCGCCAGC
AAGGCCGGCG CCAACCGCAC CTCGTTCATT GCCGAGTTGA GCAACGCGGG CATCCTCTCA
GCCCTGGAAG TGGCCGAGAC GGTCTCGACC ATGTTCAGCG CGCCGCTGCT CGATCTTGAT
GCCATCAACG CCGCGCGCCT GCCGCATGAG TTGCTGGACG CCAAGATCAT CAGCTCCTAT
CGCGTCCTCC CGTTGAGCAA GCGCGGCAAC CGCATCACGG TGGCCACAGC CGACCCGACA
CAACAGGAAG CTGCGGAGCA GATCAAGTTC ACCACCCAGC TAGGCGTGGA TTGGATCATC
GTCGAAGCCG ACAAGCTGGA GCGCCTGATA GCTCAGCAGA GCAAAAGCGC CAGCGAAGCC
ATGGAGAGCT ACAGCGGGGG CGGCGATTTC GAGTTCGGCG ACCTCAAGCC CGACGAGGTT
GCCGAGGAGA AAGACAACAC GGCGGCAGCG GACGTCGAGG ACGCGCCCAT CGTCAAGTTC
CTGCACAAAA TGCTGCTCGA CGCCTTCAAC ATGCGCGCGT CGGACCTGCA TTTCGAGCCC
TACGAACATC AATATCGCGT ACGCTTCCGC ATTGACGGCG AGTTGCGCGA AATCGCATCA
CCGCCCATTG CCATAAAGGA GAAGTTGGCC TCGCGCATCA AGGTGATCTC GCGCCTGGAC
ATCTCGGAAA AACGTGTTCC TCAAGATGGC CGCATGAAGC TCAAGGTCGG CCCGGACCGC
GTCATCGATT TTCGCGTGAG CACCCTGCCC ACGCTCTTTG GCGAGAAGAT CGTGATCCGT
ATCCTTGACC CAAGCTCGGC CAAGATGGGC ATTGATGCCC TGGGCTACGA ACCCGAGGAA
AAGGCACGTC TGATCGAAGC CATCGGGCGC CCCTACGGAA TGATTCTGGT GACAGGCCCC
ACGGGCTCGG GCAAGACGGT GTCGCTGTAC ACCTGCCTGA ACATGCTGAA CAAGGCCGGG
GTGAACATCG CAACGGCAGA AGACCCTTCG GAAATCAACC TGCCCGGCGT CAATCAGGTC
AATGTGAACG AAAAGGCGGG CCTTACCTTT GCGACGGCGC TCAAGGCCTT TCTGCGCCAG
GATCCCGACA TCATCATGGT CGGAGAAATC CGTGACCTAG AAACCGCCGA CATCTCGATC
AAGGCCGCAC AGACCGGCCA CTTGGTGCTG TCCACGCTGC ACACCAACGA CGCACCGACC
ACGTTGACGC GCATGCGCAA CATGGGCATT GCCCCCTTCA ACATCGCATC GAGCGTGATC
TTGATCACCG CCCAGCGGCT GGCCAGGCGC CTGTGCCCCC AGTGCAAGGA GCCTGCGGAT
ATCCCGCGGG AGGCGCTGCT GGAGGCGGGC TATGACGAGG CGGACATCGA TGGCAGCTGG
GTCACCTACA AGCCCGTGGG CTGCCAAGCA TGCAACAACG GCTACAAGGG ACGCGTCGGC
ATCTACCAGG TGATGCCGAT CAGCGAGGAA ATCCAGCGCA TCATCCTGCA GGACGGCAGC
GCACTGGAGA TCGCGGCACA GGCCAAGCGT GAAGGCGTAC GGTCTCTGCG CGGATCCGGA
CTGCACAAGG CCAGACTAGG ACTGACCTCG CTCGAAGAAG TGCTGGCAGT CACCAATGAG
TAA
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| Protein sequence | MAVADSSLKN ASAVASLPGI GRALISAGKV SQQAAEAAAS KAGANRTSFI AELSNAGILS
ALEVAETVST MFSAPLLDLD AINAARLPHE LLDAKIISSY RVLPLSKRGN RITVATADPT
QQEAAEQIKF TTQLGVDWII VEADKLERLI AQQSKSASEA MESYSGGGDF EFGDLKPDEV
AEEKDNTAAA DVEDAPIVKF LHKMLLDAFN MRASDLHFEP YEHQYRVRFR IDGELREIAS
PPIAIKEKLA SRIKVISRLD ISEKRVPQDG RMKLKVGPDR VIDFRVSTLP TLFGEKIVIR
ILDPSSAKMG IDALGYEPEE KARLIEAIGR PYGMILVTGP TGSGKTVSLY TCLNMLNKAG
VNIATAEDPS EINLPGVNQV NVNEKAGLTF ATALKAFLRQ DPDIIMVGEI RDLETADISI
KAAQTGHLVL STLHTNDAPT TLTRMRNMGI APFNIASSVI LITAQRLARR LCPQCKEPAD
IPREALLEAG YDEADIDGSW VTYKPVGCQA CNNGYKGRVG IYQVMPISEE IQRIILQDGS
ALEIAAQAKR EGVRSLRGSG LHKARLGLTS LEEVLAVTNE
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