| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5430 |
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| Symbol | |
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| ID | 5751047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 6029278 |
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| End bp | 6031065 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641300560 |
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| Product | tetratricopeptide TPR_4 |
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| Protein accession | YP_001566444 |
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| Protein GI | 160900862 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCATC GCCTTCGCCT TCAGGGACTT GCCGTGGCAG CAGCCCTGGC CATGGGTTCC
GCCACTGCCT GGGCACTCCC AGGCAAGACC GCAGCCACCA TCGAGACGGA ATCCCCCGAA
CCTCCCTCGT CCGCCGCCGC CTCTGCGGAG GACGATCGCG CCGCCCTCAA CGCCGAGCTG
TTCTACGAGA TCCTGGTCGG CGAGATCGCC GCCAGCCAAG GTGCGCTGGG CGACGCCCAG
GCCATGATGA TGGAGGCCGC TCGCACCAGC GGCAGCGAGC AGCTGTACCG GCGCGGCACC
GAGCTGGCGC TGCAGTCGCG CTCCGGCGAG CGCGCACTGG CCAACGCCCG CGCCTGGCTC
GACGCCTTTC CCCAGTCCCG CGACGCCAAC CGCTTCGTGC TTCAGATCCT GGTGGCACTG
AACCGCATCG CCGATACCGG CAGCTATCTC AAGCGGGAGA TCGAGGCCAC GCCTGCGCCC
TCCAAGCCCG CCACCTACCT GGGCATCACC CAGCTCTACA ACAACGCCAG CGACAAGGCC
CTGGCGGCCG ATGTGGTCGA GCAGGCCATG GCGGGCGAGA CCGACAACCC CGCCAGCGGC
CCGCTGGCCT GGGCCACCAT CGGCCACATG CGCCTGGGCG CCGGGCAGAA GGCTGCCGCC
ATGCAGGCCG TGCAAAAGGC ACAGGCGCTG ACACCCGACA CCGGCCCCGT GGCCCTGCTG
TCCATGGAGC TGCTGGAAGC CGGCATGCCC GAGGCGGAGC CCATCGTCAA ACGCTACCTA
GCCAAGAACC CTTCAGCCCA GATGCGCATG GCCTATGCCC GCGTGCTGCT GGGCCAGCAG
CGCCTGGACG AGGCCCGCCA GCAACTGGTC TCCATCACCG TGGACTCCCC CGACTACGCC
GAAGCCTGGG CCACCCTGGC CGCGCTGCAG CTGCAGTCCA ACGACGTGGA TGCAGCCCAG
GCGTCCACCG AGCGCTTCGG CAAGCTCGTG CCGCAGATTC CCGCCGGTGT GGCGCGCAGT
GCGGGCCAGT CCCAGTACTA CCTGCTGCAG TCCCAGATTG CAGAAAAGCA GGGCAAGTTC
GCCGAGGCCG ACGCCCTGCT GCGCCGCATC GACGACGCGC CCAATCTGTT GAGCGTGCAG
GCGCGCCGTG CCGCCCTGCT CGCGCGCCAG GGCAAGCTCA AGGAAGCCCG CGCCCTCATC
GAGGCCGTGC CCGCCAGCGG CCTCAGCCAG CAGCGGCTCA AGCGCCTGGC CGAAGTGCAG
CTGCTGCGCG ATGCCAATCA GAATGCACAG GCCTACGCGC TGCAGGCCGA GTTGCAAAAG
CAGGACCCTG AAGACGCCGA GCTCGCCTAT GACACCGCCC TGCTGGCGGA GCGCATTGGC
AAGCATGATG AAATGGAGCG GCTGCTGCGC GGCATCATCG CGCGCCAGCC CGATTTCCAG
CACGCCTACA ACGCGCTGGG CTACTCCTTC GCCGAACGCG GCATCCATCT GGATGAAGCC
GAAAAGCTCG TCGGCAAGGC GCTGGAAATG TCGCCTGGCG ACCCCTTCAT CACCGACAGC
CTTGCCTGGG TGAAATTCCG CCGGGGCGAC CTGGACGAAG CCCTCAGGCT GCTCGAAAGC
GCCTACGCAT CACGCCCCGA CGTGGAGATC GCCGCACACC TGGGCGAAGT GCTCTGGGCC
AAGGGTGATC GCGAACGCGC GCAGAAGATC TGGCGCCAGG GCCTGGCCAC CAGTCCTGAC
AACACGACCC TGCGCGAAAC CCTGCGCCGC CTGGGCGTCT CGCTTTGA
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| Protein sequence | MDHRLRLQGL AVAAALAMGS ATAWALPGKT AATIETESPE PPSSAAASAE DDRAALNAEL
FYEILVGEIA ASQGALGDAQ AMMMEAARTS GSEQLYRRGT ELALQSRSGE RALANARAWL
DAFPQSRDAN RFVLQILVAL NRIADTGSYL KREIEATPAP SKPATYLGIT QLYNNASDKA
LAADVVEQAM AGETDNPASG PLAWATIGHM RLGAGQKAAA MQAVQKAQAL TPDTGPVALL
SMELLEAGMP EAEPIVKRYL AKNPSAQMRM AYARVLLGQQ RLDEARQQLV SITVDSPDYA
EAWATLAALQ LQSNDVDAAQ ASTERFGKLV PQIPAGVARS AGQSQYYLLQ SQIAEKQGKF
AEADALLRRI DDAPNLLSVQ ARRAALLARQ GKLKEARALI EAVPASGLSQ QRLKRLAEVQ
LLRDANQNAQ AYALQAELQK QDPEDAELAY DTALLAERIG KHDEMERLLR GIIARQPDFQ
HAYNALGYSF AERGIHLDEA EKLVGKALEM SPGDPFITDS LAWVKFRRGD LDEALRLLES
AYASRPDVEI AAHLGEVLWA KGDRERAQKI WRQGLATSPD NTTLRETLRR LGVSL
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