Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_5417 |
Symbol | |
ID | 5751032 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 6011682 |
End bp | 6013457 |
Gene Length | 1776 bp |
Protein Length | 591 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641300545 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001566431 |
Protein GI | 160900849 |
COG category | [S] Function unknown |
COG ID | [COG4254] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGCCG CCCTGGGCAG GCCCGTATCG CGGGCCTGCA TGCTGGCCGC TCTCGGCCTG CTGGGCCTGG GCGGCGCGCA GGCCCAGATC AAACCCGCGG GCCGCAACGG CGACACGATG GCACACCGGG TCGTCGCCGG CGACACGCTG GAGCAGCTGG CGGCCCGCTA CCTGGGCGAT GCCCGCCAGT GGACCGACCT GCAGCAGCAC AACGGCGTGG CCAACCCCTA CCGCCTGCGG CCCGGCTCCG TGCTGGAGAT CCCCGTGCGC CTGCTGCGCG CCGCCGTGGC CTCCGTGGAA TTCGTGCAGG GCGATGCGCG CAGCACGCGC CCGCTGGACC ACCTGGCCGA TACGCAGGGC GCGGCCGGAG ACGATGCGGG CCAGCCCCTG CGCAAGGGAC AGACGCTGCA GGAAGGCGAG CGCCTGCAGC TGGCCCCGGA CGCATTCGTC GCCGTGCGCT TGGCCGATGG CTCCCTGGTG CGCGTGCAGT CGCAGTCCGA TGTGGTGCTG CGCCAGATGC GCCGCAAGGG CCGTGCCGGC AGCCTGCAGT CCGTGCTGGA CCTGCGCGAG GGCGGCGTCG AGGCCTCCGT GCCGCCCGAG CCCGGCAACG CACAGCGCCG CTTCGAGATC CGCACGCCCG CTGCATCGAC CAGCGTGCGC GGCACCCGCT TCCTGGTCCA GGCTGATGCC GCCGGCAGCA CGGCAGCCGC CGTCGATGAA GGCACCGTCG CCGTGGGCTC CGACGCCTCA AGCGCGAACA CTGGCGATGC GCTGCTGAGC CCGGGCCAGG GCGTGGCCGT GGCCGCCAAT GGCCGCGTGG GCGAGCCCCG CCCCATGCTG GGTGCGCCCG ACATCACGGC GTGGCCCGCG CTGGCGGAAG ACGCCAACTG GATCAGCCTG CCCCTGCCCG GCTTGCCGGG CGCCGTGCGT TACCAGCTAC AGCTGTCGCG CGATGCCGAC ATGACCCAGG TGCTGCGCAG CGCCAGCTTC CAGGCCACGG CATCGCCGCT GCGCCTGGCG GGCGTGGAGG ACGGTGATTA CGTGCTGTCC CTGCGCGGCA TCGATGCCCA GGGCATTCCG GGCGCCGCCA GCCGCCGCGC CCTGCGCGTC AAGGCCCATC CCGTGCCGCC GCTGTATGAA TCCCCCCAGG CCGACGCCAC CGTGGGCCTG GGCCGTGCCA GCCTGCAATG CACCCAGGTC GTGGGCGCCG CGCGCTACCG CATCCAGGTC GTCTCTGCCG ATGCGCAGGC CGGCTTTGCC GAGCCCGCCA TCGATGCACG CGACCTGAAC GACTGCACAC TGCCCGCCAC CACGCTGGCC CGCCTGCCGG CCGGACGCTA TCTCTGGCGT GCCGCCAGCA TTCGCACGCT GGCCGATGGA CAGCCCGACC AGGGCCCGTT TGCCGCAGCC CAGGCCATGC GACTGGCGGC CGTTCCTCCC CAGCCCTCGG CCAGCGCGCT GCAGATGGGC GGCGGCCCCG CAGAAGGCAG CCGCCAGATC CGCTGGAGCG GCGAGCCCGG CCAGCGCTAC CACGTGATGG TGGCGCGCGA CCAGGAGTTC ACCGCGCCGC TGGTGGACCT CTGGACCGAC CAGCCGCAAT GGAGCACCGA GGAGTTGCCC GCAGGCAGCT ACTACCTGCG CCTGCAGATC GAGGATGCCA ACGGCCTGCG CAGCGATTTC TCGGCCGCGC GCCAGTTCCG CACCGGCAGC TGGATCGTCG ACGCCAGCGG CGAGATGATG CATTCGGGCA ACGGAGAGCG CCTGCAGCGC CAGTAG
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Protein sequence | MPAALGRPVS RACMLAALGL LGLGGAQAQI KPAGRNGDTM AHRVVAGDTL EQLAARYLGD ARQWTDLQQH NGVANPYRLR PGSVLEIPVR LLRAAVASVE FVQGDARSTR PLDHLADTQG AAGDDAGQPL RKGQTLQEGE RLQLAPDAFV AVRLADGSLV RVQSQSDVVL RQMRRKGRAG SLQSVLDLRE GGVEASVPPE PGNAQRRFEI RTPAASTSVR GTRFLVQADA AGSTAAAVDE GTVAVGSDAS SANTGDALLS PGQGVAVAAN GRVGEPRPML GAPDITAWPA LAEDANWISL PLPGLPGAVR YQLQLSRDAD MTQVLRSASF QATASPLRLA GVEDGDYVLS LRGIDAQGIP GAASRRALRV KAHPVPPLYE SPQADATVGL GRASLQCTQV VGAARYRIQV VSADAQAGFA EPAIDARDLN DCTLPATTLA RLPAGRYLWR AASIRTLADG QPDQGPFAAA QAMRLAAVPP QPSASALQMG GGPAEGSRQI RWSGEPGQRY HVMVARDQEF TAPLVDLWTD QPQWSTEELP AGSYYLRLQI EDANGLRSDF SAARQFRTGS WIVDASGEMM HSGNGERLQR Q
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