Gene Daci_5397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5397 
Symbol 
ID5751012 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5990775 
End bp5991320 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content71% 
IMG OID641300525 
Producthypothetical protein 
Protein accessionYP_001566411 
Protein GI160900829 
COG category[L] Replication, recombination and repair 
COG ID[COG3663] G:T/U mismatch-specific DNA glycosylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.538915 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.547582 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGCCA TGTCCTTGAC CGTTCCCGAC CTGCCGCCCC CCGGCGCCCC GCGCTGGCAG 
GGCCTGGCGC CGGTGGCCGA TGCGCGGACC CGGGCCCTGG TGCTGGGCAG CTTTCCGGGC
CTGCGATCGC TGCAATTGCA GCAGTACTAT GCCCATCCGC AAAACCAGTT CTGGCCCTTG
CTCCAGGCCC TGTGGCCCGG GCATCCGCAG CCCGGCCGCG ACGACTATGC GGGCCGCTGC
GAATGGCTGC TGGCCCGCGG CCTGGGCCTG TGGGACGTGT ATGCCAGCTG CGAGCGCGAA
GGCAGCCTGG ACAGCGCCAT CCGCGCGGCC GAGGTGAATG ATTTCGTGGC GCTGCGCACG
CATTGCCCCC AACTGGCGCT GGCCCTGCAC AACGGTGGCG AGAGCTACAA GCATGCCGGC
CGCACGCAGG CCCTGGGCCT GGCCGCCGTG AAGCTGCCAT CGACCAGCCC GGCCAACGCG
AGCTGGAGTT TCGCGCGCAA GGTCCAGGCC TGGCGCGAGG CGCTGGCTGC CCATCAATTG
CTCTGA
 
Protein sequence
MPAMSLTVPD LPPPGAPRWQ GLAPVADART RALVLGSFPG LRSLQLQQYY AHPQNQFWPL 
LQALWPGHPQ PGRDDYAGRC EWLLARGLGL WDVYASCERE GSLDSAIRAA EVNDFVALRT
HCPQLALALH NGGESYKHAG RTQALGLAAV KLPSTSPANA SWSFARKVQA WREALAAHQL
L