| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5395 |
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| Symbol | |
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| ID | 5751010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5988045 |
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| End bp | 5989847 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641300523 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001566409 |
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| Protein GI | 160900827 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATC CGACCTCCAC CACGCAGCCC AAACCCGCCG TTGTTCCCAG CAATCCTTCG
GGGCCCCTGG ACTGGCGCAG GCTGGTGCAG TGGCTGCTGG CCGATGGCGT GATCACGGCC
GAAGAGGCCC AGCGCACCGT GGCGCGCTGC TCGCAGGCCG AGAGCACCCA GCACCCGCTG
GTCCGGCTGG CCAATGTGGG CATGGCCCGC GCCGGCGACG GGCGCGCGCT GGACATCGAG
GAGCTGACCC AGTACCTGGC AACCCGCAGC GGCATGGCCT ACCTGCGCAT CGACCCGCTG
CGCGTGGACG CGGGCCGCGT CGGCGAAATC ATGAGCGCCA GCTATGCCGA GCGCCACAAG
GTGCTGCCCG TGCAGGTATC GCCGCAGGAA GTGGTGGTGG CCACGGCCGA GCCCTTCATC
GACGACTGGG TGGCCGAGGT CGAGCGCCAG GCGCGCCGCA AGGTGCGCCG CGTGCTGGCC
AGTCCGCTGG ACCTCAAGCG CTACACGGGC GAATTCTTTG CGCTGGCCAA ATCGGTGCGC
GCAGCCGAGA AGGCGGGCGG GGCCGCCAGC GCGGCCAGCT TCGAGCAACT GGTGGAGCTG
GGCAACAGCA GCAAGCAGCT CGACGCCAAC GACCAGGGCG TGGTGCGCGT GGTGGACTGG
CTGTGGCAAT ACGCCTTCGA CCAGCGCGCC AGCGACATCC ACATGGAGCC CCGGCGCGAG
CAGGGCGTGA TCCGTTTTCG CATCGACGGC GTGCTCCACC CGGTCTACCA GGTGCCCATG
GGCGTGCTCA ATGCCATGGT CTCGCGCGTG AAGCTGCTGG GGCGCATGGA CGTGGTGGAA
AAGCGCCGCC CGCAGGATGG CCGCATCAAG ACCCGCAACC CGCGCGGTGA CGAGGTGGAA
ATGCGCCTGT CCACGCTGCC CACGGCCTTT GGCGAGAAGC TGGTGATGCG GATCTTCGAT
CCCGACAACA CGGTCAAGGA CCTGGATGCA CTGGGCTTCA CCAGCCATGA CGCCCAGCGC
TGGAACGAGC TGGTGCGCCG CCCGCACGGC ATCATCCTCG TGACCGGGCC CACGGGCTCG
GGCAAGACCA CCACGCTGTA CTCCACGCTC AAGCGCGTGG CCACGGAGGC GGTCAATGTC
AGCACCGTGG AAGACCCGAT CGAAATGATC GAGCCCAGCT TCAACCAGAC CCAGGTGCAG
CCGCAGCTGG ACTTCGGCTT CACCGAGGGA CTGCGCTCGC TGATGCGCCA GGACCCGGAC
ATCATCATGG TGGGCGAAAT CCGCGACCTG GCCACCGCCG AAATGGCCGT GCAGGCCGCG
CTGACCGGCC ACCTGGTGTT CTCCACGCTG CACACCAACG ATGCGCCCAG CGCCGTGAGC
CGGCTGATGG AGCTGGGCGT GCCGCCCTAC CTGATCAATG CCACGCTGCT CGGTGTGCTG
GCCCAGCGCC TGGTGCGCAC GCTGTGCCCG CAGTGCAAGC AGCGTGACGA GGAGACCTCG
GCCGCCACGC TGGCCGAGGC CGTGCGGCCC TGGAAACTGT CAGGCAGCTA CCAGCCCTAC
AAGCCCGTGG GCTGCGTGGA GTGCCGCATG ACGGGCTTTC GCGGGCGCAT GGGCCTGTAC
GAGCTGCTGA CCGTGAGCGA GGCGCTCAAG CAGCAGGTCC ACACCTCGCC TTCCATGGAT
GCGCTGCGCC GCCAGGCCGT GCAGGACGGC ATGCGCCCGC TGCGCCTGGC AGGTGCCCTG
CGCGTGGCCG AAGGCGTGAC CACGCTGGAC GAGGTCATGG CCAGCACGCC CTTGCTGGGA
TGA
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| Protein sequence | MSDPTSTTQP KPAVVPSNPS GPLDWRRLVQ WLLADGVITA EEAQRTVARC SQAESTQHPL
VRLANVGMAR AGDGRALDIE ELTQYLATRS GMAYLRIDPL RVDAGRVGEI MSASYAERHK
VLPVQVSPQE VVVATAEPFI DDWVAEVERQ ARRKVRRVLA SPLDLKRYTG EFFALAKSVR
AAEKAGGAAS AASFEQLVEL GNSSKQLDAN DQGVVRVVDW LWQYAFDQRA SDIHMEPRRE
QGVIRFRIDG VLHPVYQVPM GVLNAMVSRV KLLGRMDVVE KRRPQDGRIK TRNPRGDEVE
MRLSTLPTAF GEKLVMRIFD PDNTVKDLDA LGFTSHDAQR WNELVRRPHG IILVTGPTGS
GKTTTLYSTL KRVATEAVNV STVEDPIEMI EPSFNQTQVQ PQLDFGFTEG LRSLMRQDPD
IIMVGEIRDL ATAEMAVQAA LTGHLVFSTL HTNDAPSAVS RLMELGVPPY LINATLLGVL
AQRLVRTLCP QCKQRDEETS AATLAEAVRP WKLSGSYQPY KPVGCVECRM TGFRGRMGLY
ELLTVSEALK QQVHTSPSMD ALRRQAVQDG MRPLRLAGAL RVAEGVTTLD EVMASTPLLG
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