| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5344 |
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| Symbol | rimM |
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| ID | 5750959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5931320 |
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| End bp | 5931889 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641300472 |
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| Product | 16S rRNA-processing protein RimM |
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| Protein accession | YP_001566358 |
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| Protein GI | 160900776 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCCACA TGCCTGAACT CGAAGCCAGC GTCCTGCCCG CCGATGCCGT GGAGGTCGGG
CGCATCGCCG ATGCCTGGGG CATCAAGGGC TGGTTCAAGG TGGCCGCCTT CAGTGCCGAC
CCCGAGGCCC TGTTCACCGC AAAGCAGTGG TATCTGCAGC CCCCCGAGAA GGGTGCGCGG
CAGTTCACCG GTACGGTGCT GCTGCCGGTC AAGCAGGCGC GCGTCCACTC CGATTCCGTC
GTCGCCACCT CGCCTGTCGT GAACGACCGC AATACCGCCG AGGCCCTGCG TGGCGCGCGC
ATCTTCGTGG CGCGCAGCGA TTTCCCGCAG CCCGAAGATG GCGAGTATTA CTGGGTCGAT
CTGCTGGGCC TGTCCGTGGT CAACCGCGAG GGCGTGGTCC TGGGCGTCGT CCGCGACCTG
CTGTCCACCG GCCCGCAGAC CGTGCTGGTG CTGGCCTATG AAGAGGATGG CAAGGAGCGC
GAGCGCATGA TTCCTTTTGT CGATGCCTAT GTGGACAAGG TGGATCTGCC GGGCAAGACC
ATCGTTGCCG ACTGGCAGCC CGACTATTGA
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| Protein sequence | MSHMPELEAS VLPADAVEVG RIADAWGIKG WFKVAAFSAD PEALFTAKQW YLQPPEKGAR
QFTGTVLLPV KQARVHSDSV VATSPVVNDR NTAEALRGAR IFVARSDFPQ PEDGEYYWVD
LLGLSVVNRE GVVLGVVRDL LSTGPQTVLV LAYEEDGKER ERMIPFVDAY VDKVDLPGKT
IVADWQPDY
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