| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5337 |
|---|
| Symbol | |
|---|
| ID | 5750952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 5924720 |
|---|
| End bp | 5926747 |
|---|
| Gene Length | 2028 bp |
|---|
| Protein Length | 675 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641300465 |
|---|
| Product | Ste24 endopeptidase |
|---|
| Protein accession | YP_001566351 |
|---|
| Protein GI | 160900769 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0501] Zn-dependent protease with chaperone function |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.296038 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGCAA GCTGGAGATT GTCGCACTCC CCGGGTTTTC CCGCAAGCCC CTGGCACAAA
AAATGGCCTG GGCCGCCAGA TTCAGACACT CAGCAGGCGC GCACGGTAGT GCGCCAGCTC
ATCGATGGAC TCGTGCACAT CGGCCAGTGC GGTGTGGCGC TGGGCCTTCT TGAAGGAGGC
ATAGGCGTCG GGCTTCCAGC GCCTGGCCAG TTCCTTGAGG GTGCTGACAT CGACATTGCG
GTAATGGAAG AAGTTGTTGA GCTTGGGCAT GTAGCGCTCC ATGAAGCGCC TGTCCTGCCC
GATGCTGTTG CCGCACAGAG GGGCCTTGCC CTTGGGAACG TACTGCGAGA GGAACTTGAT
CAACGCAGCC TCCGCATCGG CCTCGCTGGT GGTCGATGCC TTGACGCGAT CGATCAGGCC
GCTCCTGCCA TGCGTGCCCT TGTTCCAGGC ATCCATGCCA TCGAGCAGCG CATCTGCCTG
ATGGATGGCA AATACCGGCC CTTCGATGCG AATGGCCAGG TCCGGACTGG TGACGACCAC
GGCGATCTCG ATGATGCGAT CGGTATCGGG CTGCAGCCCG GTCATCTCGC AGTCGAGCCA
GACGAGGTTG AGATCGGATT TGGCCAGGAT GATGGACGTG CCGGGTTCGG CGGGGACGGG
AATGCAAGCG CTGGCGGCTT CGGAGGCTTC GGACATGGCC CAAATTGTCG CCTACACTGC
GGCCACATGG CCTTCAACCC CGATTTTTCC TCGACGCTGT CCCTGCTGTT TGCCGCAGCC
GTGCTCGCCC AGTGGCTGCT GCGCGCCTGG CTGGCCTCGC GCCAGGTCCG CCATGTGGCC
CGCCATCGGG CCGAGGTGCC TGAGGCCTTT GCGCAACGCA TCAGCCTCGC GGCCCATCAA
AAGGCCGCCG ACTACACGCT GGCCAAGGCC CGCATCGCCC TGATCGAGAT GACGCTGGGC
GCCGTGGTGC TGCTCGCATG GACACTGCTG GGCGGGCTCG ACGCACTCAA CCAGTGGCTG
CTGGAACTGA TGGGCGCCGG CCTGTGGCAG CAACTGGCAC TGCTGGCCGG CTTTGCCCTG
ATCTCCGGGC TGGTGGAGCT GCCGCTGTCG CTCTACCAGA CCTTTGTGCT GGAGCAGCGC
TTTGGATTCA ACCAGATGAC GCTGCGGCTG TGGCTGACCG ATGCCATCAA GTCCACCGCC
ATGGGCGCGG CCATCGGCCT TCCCCTGGCG GCTCTGATCC TGTGGCTCAT GGGCTCGGCC
GGCGACCTGT GGTGGCTGTG GGCCTGGGCC GTGTGGACGG CGTTCAACCT GCTGCTGATG
TGGATCTTTC CGACCTTCAT CGCACCGCTG TTCAACAAGT TCGAACCGCT GGCCGAAGGC
ACTCTCAAGG AGCGCGTGAG CGCACTGATG CAGCGCTGCG GCTTCACGGC CAAAGGCCTG
TTCGTGATGG ATGGCAGCCG CCGCTCGGCC CATGCCAATG CCTATTTCAC GGGCTTCGGC
CATTCCAAGC GCGTGGTGTT CTTCGACACC TTGCTCAAGC AGCTCGACGC CGACGAGGTG
GAGGCCGTGC TCGCGCACGA GCTGGGCCAC TTCAAGCACC GCCACATCCT CAAGCGCATG
CTGCTGATGT TCGCCGCCAG CCTGGCCGGC TTCGCACTGC TGGGCTGGCT GTCGCAGCAG
CTGTGGTTCT ACCTGGGCCT GGGCGTGCGC CCCGGCCTGG ACCTTGCGCT GGGCCATGGC
GGAATAGGCG CCGGCAACGA GGCCGTGGCA CTGCTGCTGT TCCTGCTGGC CGTGCCGGTG
TTCAGCTTCT TTGTCACCCC GCTGTTCTCG GCCCTGTCGC GCCGCGACGA ATTCGAAGCC
GATGCCTATG CCATGCAACA GGCCAGCGGC GCCCATCTGG CCTCGGCACT GCTCAAGCTG
TACGAGGACA ATGCTTCAAC GCTCACGCCC GATCCCTGGT ACGTGGGCTT TTACTACTCG
CATCCGCCCG CCCTCGCCCG GCTGGCGCGC ATGCCTTCTC CGACCTGA
|
|---|
| Protein sequence | MGASWRLSHS PGFPASPWHK KWPGPPDSDT QQARTVVRQL IDGLVHIGQC GVALGLLEGG
IGVGLPAPGQ FLEGADIDIA VMEEVVELGH VALHEAPVLP DAVAAQRGLA LGNVLREELD
QRSLRIGLAG GRCLDAIDQA APAMRALVPG IHAIEQRICL MDGKYRPFDA NGQVRTGDDH
GDLDDAIGIG LQPGHLAVEP DEVEIGFGQD DGRAGFGGDG NASAGGFGGF GHGPNCRLHC
GHMAFNPDFS STLSLLFAAA VLAQWLLRAW LASRQVRHVA RHRAEVPEAF AQRISLAAHQ
KAADYTLAKA RIALIEMTLG AVVLLAWTLL GGLDALNQWL LELMGAGLWQ QLALLAGFAL
ISGLVELPLS LYQTFVLEQR FGFNQMTLRL WLTDAIKSTA MGAAIGLPLA ALILWLMGSA
GDLWWLWAWA VWTAFNLLLM WIFPTFIAPL FNKFEPLAEG TLKERVSALM QRCGFTAKGL
FVMDGSRRSA HANAYFTGFG HSKRVVFFDT LLKQLDADEV EAVLAHELGH FKHRHILKRM
LLMFAASLAG FALLGWLSQQ LWFYLGLGVR PGLDLALGHG GIGAGNEAVA LLLFLLAVPV
FSFFVTPLFS ALSRRDEFEA DAYAMQQASG AHLASALLKL YEDNASTLTP DPWYVGFYYS
HPPALARLAR MPSPT
|
|---|
| |