| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5310 |
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| Symbol | |
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| ID | 5750922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5881707 |
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| End bp | 5883803 |
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| Gene Length | 2097 bp |
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| Protein Length | 698 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641300435 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001566324 |
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| Protein GI | 160900742 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.910175 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.618905 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGACA CGACCACCGA TCCCCGACCG GCGCCACCTG CGCCGCCAGT GGCTGCGCCA
CCGGATGCGC CGCAGGCGGC CACGCCATCG CCAGCCGAGC CTGCACCGCG CATCACGTTC
TCCGGCCCCG TCGTCATTCC TTCCTTGCTG GTTCTGGGCC TGCTGCTGCT GTACTGCGGC
TTCATGCCCG ACAGTGCCGA CCGGCTGTTC TCCAGCGCCC AGGCCTGGGT GGTGGGGCAC
ATGGACTGGT TCTATGCCGT CTCGGTCACG CTGTTCCTGG TCTTTCTGAT CTTCGTCGCG
TCCAGCCGTT TCGGTGATAT CCGCCTGGGT CCCGATGATG CTGAGCCCGA GTTCAGCTTC
ATCTCCTGGA CCGCCATGCT GTTCGCCGCC GGCATGGGCA TCGGCCTGAT GTACTTCGGC
GTGGGCGAGC CGCTGCAGCA TTTCCTCAAG CCGCCCACGG CCGTGCCTTC CACGCCGGCT
GCCGCGCGCG AGGCGCTGCA GTCCACCTTC TTCCACTGGG GCTTCCATGC CTGGGCCGTC
TACGGGACCA TGGGCCTGGT GCTGGCGTAC TTCGGCTTTC GCTACAACCT GCCGCTGACC
ATGCGCTCGG GCCTGTACCC GCTGCTGGGC AAGCGCATCA ACGGCCCCAT CGGCCACAGC
GTGGATGCCT TCGCGCTGGT GGGCACCATC GCGGGTATCG CCACCACGCT GGGCTACGGC
GCGCTGCAGC TGGCCGCCGG CCTGCACACC CTCACGGGCT GGGACACCTC TGCGGCGGCT
TTCCGCATCG CGGTCATCGT CATCGTGGTC TGCCTGGCCG GGCTGTCGGC CGTCTCGGGC
CTGGACAAGG GCGTGCGCCG CCTGAGCGAG TTCAACCTCG TGCTGGCCTT CATCCTGCTG
GCCTTCGTCA TCGTGGCCGG GCCCACGGTC TTCCTGTTCG AGGCGCTGAG CGAGAACATC
GGCAACTACG TGTCTGGCCT GGTCCAGCTG TCGTTCCGCA CCTTCGCCTA CGAGCCGCCC
AGCCAGGAAG GCTGGTTCGG CGGCTGGACC ATCCTCTACT GGGCCTGGTG GATCTCCTGG
TCGCCCTTCG TGGGCATGTT CATCGCGCGC ATCTCGCGCG GGCGCACCAT CCGCCAGTTC
GTGACCGGCG TGCTGCTGGT GCCCACGGCC TTCAACCTGC TGTGGATGAC GGCCTTCGGC
AACAGCGCCA TCTGGATAGA CACCCACGTG GCCATGGGCG CGTTGGGGCA GACGGCCTCG
AACGTGGATG CGCTGCTGTT CCGCTTCTTC GAGTACCTGC CCTGGTTCAA GCCCGTGGCT
TGGCTCACCA TCGTGCTGAT CGCGGTGTTC TTCGTCACCT CGGCGGACTC CGGGGCCTTC
GTGGTGGACA ACATCGCCTC GCGCGGCCAT GCGCGTTCGC CGGTCTGGCA GCGGCTGTTC
TGGGCTGCCG TGCTGGGCGT GACGGCCATG GTGCTGATGC TGGCCGGCGG CCTCAAGGCG
CTGCAGGCCA TGACCCTGGT GGCGGCCCTG CCCGTGGCGG TCATCATGCT GGCGCTGTGC
TACGGGCTGT GGCGCGGGCT GCAGGCCGAC CGCGCGCACT TCTCGCCCGA CCTGGCTCCG
GCCACCAGCT TCTGGAGCGG CCAGCACTGG CGCAAGCGCC TGGAGCAGAT CGTGCACCAG
CCCTCGCGCG CCGATGTGCG CAGGTTCCTG GCCGGCGTGG TGCTGCCCGC CATGAACGAG
GTGGCCGCCG AGATGCAAAG GCGCGGTGTT GAGGCCGTGG TCACCGAGGA CCTGGATGGC
GAGGGCGCCT TGCGCCTGAC CGTGCCCGAT CCCTCGCTGC GCGACTTCGT CTACGGCGTG
CGCGCCACGC GCCGCACGGT GCCCACCTTC CTGGTGAGCG AGGCGGCCAG CGAGCAGGAG
CGCCGCCATG TCTACGAGCC CATCACCTTC TTCGAGGATG GGCGCCTGGG CCACGACATC
CAGTACCTGC GAAGCGAGGA AGTCATCGCC GACATCCTGC GCCACTACGA GCGCTACCTG
TCGCTGAGCG CCGACAAGCG CACGCATCTG CTGAACCGGG CTCCGGGCCA CAGCTGA
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| Protein sequence | MPDTTTDPRP APPAPPVAAP PDAPQAATPS PAEPAPRITF SGPVVIPSLL VLGLLLLYCG
FMPDSADRLF SSAQAWVVGH MDWFYAVSVT LFLVFLIFVA SSRFGDIRLG PDDAEPEFSF
ISWTAMLFAA GMGIGLMYFG VGEPLQHFLK PPTAVPSTPA AAREALQSTF FHWGFHAWAV
YGTMGLVLAY FGFRYNLPLT MRSGLYPLLG KRINGPIGHS VDAFALVGTI AGIATTLGYG
ALQLAAGLHT LTGWDTSAAA FRIAVIVIVV CLAGLSAVSG LDKGVRRLSE FNLVLAFILL
AFVIVAGPTV FLFEALSENI GNYVSGLVQL SFRTFAYEPP SQEGWFGGWT ILYWAWWISW
SPFVGMFIAR ISRGRTIRQF VTGVLLVPTA FNLLWMTAFG NSAIWIDTHV AMGALGQTAS
NVDALLFRFF EYLPWFKPVA WLTIVLIAVF FVTSADSGAF VVDNIASRGH ARSPVWQRLF
WAAVLGVTAM VLMLAGGLKA LQAMTLVAAL PVAVIMLALC YGLWRGLQAD RAHFSPDLAP
ATSFWSGQHW RKRLEQIVHQ PSRADVRRFL AGVVLPAMNE VAAEMQRRGV EAVVTEDLDG
EGALRLTVPD PSLRDFVYGV RATRRTVPTF LVSEAASEQE RRHVYEPITF FEDGRLGHDI
QYLRSEEVIA DILRHYERYL SLSADKRTHL LNRAPGHS
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