| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5282 |
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| Symbol | |
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| ID | 5750894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 5848394 |
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| End bp | 5851528 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641300407 |
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| Product | ribonuclease |
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| Protein accession | YP_001566296 |
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| Protein GI | 160900714 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0972122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGGA TGCTCATCAA CGCCACGCAG TCGGAAGAAC GTCGCCTTGC CATCGTCGAT
GGCCAGAAGC TGCTCGACTA CGAAATCGAA ATCGAAGGGC GCGAGCAGCG CAAGGGCAAC
ATCTACAAGG CCGTGGTCAC GCGCGTGGAG CCCAGCCTCG AGGCCTGCTT CGTCGATTAC
GGCGAGGACC GCCACGGCTT CCTGCCCTTC AAGGAAATCT CCAAGCAGTA TTTCGCCGAA
GGCGTCTCCC CCAGCCAGGC CCGCATCAAC GAAGTCATCC GCGAAGGCCA GGAACTGATC
GTCCAGGTCG AGAAGGAAGA GCGCGGCAAC AAGGGCGCGG CCCTGACCAC CTTCATCTCG
CTGGCCGGCC GCTACGTGGT GCTGATGCCC AACAACCCGC GCGGCGGTGG TGTCTCGCGC
CGCATCGAGG GCGAGGACCG TGCCGAACTC AAGGAGGCGA TGGACCAGCT TGAGTACCCC
AAGGGCATGT CCATCATTGC GCGCACCGCC GGCATCGGCC GCACCGCGCC CGAACTGCAG
TGGGACCTGA ACTACCTGCT CAAGCTGTGG AACGCCATCG ATGGCGCCGC CAAGTCGGCC
AAGGGCGCCT TCCTGATCTA CCAGGAATCG AGCCTGGTGA TCCGCGCCAT CCGCGACTAC
TTCAACGGCG ACATCGGCGA CATCCTCATC GACACCGACG ACATCTACGA GCAGGCGCAG
CAGTTCATGC AGCACGTCAT GCCCGAGCAT GCCGCCCGCG TCAAACGCTA CCGTGACGAC
GCCCCGCTGT TCAGCCGCTT CCAGATCGAG CACCAGATCG AATCGGCCTA CGCACGCACC
GTGACCCTGC CCTCGGGCGG CGCCATCGTC ATCGACCACA CCGAAGCGCT GGTCTCCATC
GACGTGAACT CGGCCCGCGC CATCAAGGGC GGAGACATCG AGGAAACCGC CACCCGCACC
AACCTGGAAG CCGCCGACGA AGTCGCGCGC CAGATGCGCC TGCGTGACCT GGGCGGCCTG
ATCGTCATCG ACTTCATCGA CATGGAGGAG AGCAAGAACC GCCGCGAGGT CGAGAACCGC
CTGCGCGACG CGCTGCGCCA GGACCGTGCC CGCGTGCAGT TCGGCACCAT CAGCAAGTTC
GGCCTCATGG AGATGAGCCG CCAGCGCCTC AAGCCCGCCC TGTCCGAAGG CGCGCACATC
AACTGCCCGC GCTGCGGTGG CTCCGGCCAC GTGCGTGACA CGGAAAGCTC GGCGCTGCAG
ATCCTGCGCA TCATCCAGGA AGAGTCCATG AAGGACAACA CGGCCGCCGT GCACTGCCAG
GTGCCCGTGG AAGTGGCCAG CTTCCTGCTC AACGAAAAGC GTGGCGAGAT CACCAAGATC
GAACTCAAGC AGCGCGTCAA CGTGATCATG GTTCCCAACA AGTCCATGGA CACGCCGCAC
TACAAGCTCG AGCGCCTCAA GCACGACGAC GTGCGCCTGG AAAGCATGGA AGCCAGCTAC
AAGCTGGCCG AGGAGCTGGA CGCGGAAACC ACGGTGACGC GCCGCTCGCA GGAGCCCACC
AACAAGCAGA CGCCCATGAT CAAGGGCGTG CTGCCCGACA TGCCGGCCCC CATCGCCGAG
CCCCGTCCCG AAGGCAGCCG CAACCGCCCG GCCAACGGCC AGCAGCGCGA TGCCAAGCCT
GCGGCAACCG CTGCAGCGCC CGCACCGGCC GTCGCCCCCG TCGTGGTCCG CGAGCAAGGC
TTCTTTGCCT GGCTCAAGAG CCTGTTCGGC TTTAGCGCGG CACCTGCGCC GGTCGCAGCG
CCCGCTCCGG CCGCCGAAGC CCCCGCTCGC GAAGCTCGCC GTGATGGCCG CAACGACAAC
CGTGGCCGCC GCAACGAACG CAATGGTGAG CGTGGCGAGC GCTCGGAGCG CAATGGCGAG
CGCGCTGGCG CCCCCAATGC CGAACGCCAG GCCGGCAACG GTGACCGCAA CCGCCGCAAT
GCCGAGCGTG GCGAGCGCAC TGAACGCGGT GAACGCCCGG AGCGTGGAGA GCGCCCGGAT
CGTGGCGAGC GCGCCGAGCG TGGTGAGCGC GCCGACCGCG GCGAACGCCG TAGCCGTGGT
GAACGCAACC GTGACGGTGA AAGCCGCCAG CCGCTGGAAG CCGTGAACGG CGTGGCCGCT
GTCGCTGCAG ATGGCAGCAC CATCGAGCAG CGTCCCGAGC GCGCCCCGCG TGGCGAGCGC
CAGGAGCGCG GTGAAGGCCG CCGCGAACGT GGCGAGCGTG GTGAACGCGC CGAACGCAGC
GAGCGCCAGC CCCGCCAGTT CGAAGTCGCT CCCGAGACCG AAGAGAACCT GGACAACCAG
GCCCAGCAAA AGGACCCGTC CCTGGACAAC GCTGCCCCCG CCTCCGGCGA AGAGCAGCCG
CGCCAGCGCC GTTCGCGCGA CCGCTATGGC CGTGACCGCC GCGAGCGTGG CGATCGCGGT
GACCGTGCAG AGCGCGCACC GCGCGAAGCG GAGGGCGAAG CCGTCCAATC CTTCGAAGCC
GCCGCTCCCG AGCAGGACCA GCCTGCCCGC CGCAGCTACT TCAACGCAGC CAGCCCTGCC
GCCGAAGCCC AGGCTCCTGA AGCCATGGCC GAAGCGCAAG TGCCTGCGCA GCCCGCAGCA
GCTGCAGCAG CCCCAGCGGT GCAGCAACCC GTCGCGGCCC CCGTGCCCGA GCAGCAGATT
GCCGCTCCCG CGCCCGTGGC TGCGGTGACC CCCGCGCCGG TCGCACCCGC CCCCGTGGTG
GCACCCGTGG CAGCACCTGC ACCCGTGGCC GCTCCTGCCG CAGTGGCAGT CGTGCCCGCA
GCAGCCAAGG CCGTTGAAGC AACCGCCGAA CGCGGCCTGC CCAAGGTCCA GGCCTACCAG
TTGCCCATGT CCGAGCTGCA GGCGCTGGCC GCCGCTTCGG GCCTGCAATG GGTGGGCTCC
GATGCCGACA AGGTGGCGGC AGCCCAGGCA GCCATCGCCG CCGAACCGCA GCCCGAGCGC
GTCGTGCGCG AGCGCCCGCC CGTGGTCGCT CTGGATGACG GCCCGCTGAT CCTCGTGGAA
ACACGCAAGG ACCTCAGCGA GCTGCAACTG CCGTTCGAGC AGCAGCCGCA GCCACAGGGC
GCGGCCCAGG TCTGA
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| Protein sequence | MKRMLINATQ SEERRLAIVD GQKLLDYEIE IEGREQRKGN IYKAVVTRVE PSLEACFVDY
GEDRHGFLPF KEISKQYFAE GVSPSQARIN EVIREGQELI VQVEKEERGN KGAALTTFIS
LAGRYVVLMP NNPRGGGVSR RIEGEDRAEL KEAMDQLEYP KGMSIIARTA GIGRTAPELQ
WDLNYLLKLW NAIDGAAKSA KGAFLIYQES SLVIRAIRDY FNGDIGDILI DTDDIYEQAQ
QFMQHVMPEH AARVKRYRDD APLFSRFQIE HQIESAYART VTLPSGGAIV IDHTEALVSI
DVNSARAIKG GDIEETATRT NLEAADEVAR QMRLRDLGGL IVIDFIDMEE SKNRREVENR
LRDALRQDRA RVQFGTISKF GLMEMSRQRL KPALSEGAHI NCPRCGGSGH VRDTESSALQ
ILRIIQEESM KDNTAAVHCQ VPVEVASFLL NEKRGEITKI ELKQRVNVIM VPNKSMDTPH
YKLERLKHDD VRLESMEASY KLAEELDAET TVTRRSQEPT NKQTPMIKGV LPDMPAPIAE
PRPEGSRNRP ANGQQRDAKP AATAAAPAPA VAPVVVREQG FFAWLKSLFG FSAAPAPVAA
PAPAAEAPAR EARRDGRNDN RGRRNERNGE RGERSERNGE RAGAPNAERQ AGNGDRNRRN
AERGERTERG ERPERGERPD RGERAERGER ADRGERRSRG ERNRDGESRQ PLEAVNGVAA
VAADGSTIEQ RPERAPRGER QERGEGRRER GERGERAERS ERQPRQFEVA PETEENLDNQ
AQQKDPSLDN AAPASGEEQP RQRRSRDRYG RDRRERGDRG DRAERAPREA EGEAVQSFEA
AAPEQDQPAR RSYFNAASPA AEAQAPEAMA EAQVPAQPAA AAAAPAVQQP VAAPVPEQQI
AAPAPVAAVT PAPVAPAPVV APVAAPAPVA APAAVAVVPA AAKAVEATAE RGLPKVQAYQ
LPMSELQALA AASGLQWVGS DADKVAAAQA AIAAEPQPER VVRERPPVVA LDDGPLILVE
TRKDLSELQL PFEQQPQPQG AAQV
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